Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoplax_20adhaerens_20[refseq_20GCF_5F000150275.1_202008-06-17] 1,414 sequences; 105,631,681 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq1375 113 3e-20 >seq1375 Length=284262 Score = 113 bits (124), Expect = 3e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971 ||| ||||| || ||| |||||||| || ||||| ||| ||| || |||| || Sbjct 62748 CACTAAATGAAGAGTGGATTCTTTTTGGATGTTATAGTCGCTTAGCGTGCGGCCATCTTC 62807 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 |||||| || || || || || | |||||||| || | || | ||||||||| ||| Sbjct 62808 CAATTGCTTACCAGCGAAAATAAGACGTTGCTGATCTGGTGGGATACCTTCTTTGTCTTG 62867 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 |||||| |||||| | | | |||||| || || || || | ||||| ||||| Sbjct 62868 AATTTTGGATTTGACATTTTCGATAGTATCACTTGGTTCGACTTCTAAGGTAATGGTTTT 62927 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || ||||||||||| |||||||| ||||| Sbjct 62928 TCCCGTTAAAGTCTTGACAAATATCTGCAT 62957 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 43909 TAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATC 43968 || ||| ||||| || ||| |||||||| || ||||| ||| ||| | || |||| Sbjct 62517 TAGCACTAAATGAAGTGTGGATTCTTTTTGGATGTTATAGTCGCTTAGTGTGCGGCCATC 62576 Query 43969 GTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATC 44028 || ||||| || || || || |||| |||||||| || | || | ||||||||| || Sbjct 62577 TTCTAATTGCTTACCAGCGAAAATCAGACGTTGCTGATCTGGTGGGATACCTTCTTTGTC 62636 Query 44029 TGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGT 44088 | ||||||| |||||| | | | |||||| || || || || | |||||||| Sbjct 62637 TTGAATTTTTGATTTGACATTTTCGATAGTATCACTTGGTTCGACTTCCAAGGTAATTGT 62696 Query 44089 TTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||||| || | ||||| || || || ||||| Sbjct 62697 TTTACCAGTGAGTGTCTTGACGAAAATCTGCAT 62729 Score = 105 bits (116), Expect = 5e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTA-ATTGACGCTCATC 43968 || |||||||| || || ||||| || || || |||||| | | | || || |||| Sbjct 63202 AAAACCAAATGAAGTGTCGATTCTTTCTGGATGTTGTAATCGCTCAGAGTG-CGACCATC 63260 Query 43969 GTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATC 44028 || | ||||| || || || || || |||||||| || | || | ||||||||| || Sbjct 63261 TTCTAGCTGTTTGCCAGCGAAAATTAAACGTTGCTGATCGGGTGGAATACCTTCTTTGTC 63320 Query 44029 TGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGT 44088 | |||||| |||||| | ||| || || || ||||| || | ||||| || Sbjct 63321 TTGAATTTTGGATTTGACGTTTTCAATGGTGTCACTGGGTTCCACTTCTAAGGTAATCGT 63380 Query 44089 TTTACCGGTTAAAGTCTTCACAAATATTTGCATGTCG 44125 ||| || ||||||||||| ||||| ||||||||| || Sbjct 63381 TTTGCCAGTTAAAGTCTTGACAAAAATTTGCATGCCG 63417 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 || ||||| || || ||| |||||||| ||||| |||||| ||||| ||| | || Sbjct 62974 AATACCAAGTGGAGTGTGGATTCTTTTTGGATATTGTAATCGCTTAATGTACGGCCGTCT 63033 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 ||||||||||| || || ||||| | || || || || |||| | |||||||| ||| Sbjct 63034 TCCAATTGTTTGCCAGCGAATATAAGTCGCTGTTGATCTGGAGGAATGCCTTCTTTGTCT 63093 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 ||| ||| || || | ||| ||||| || ||||| || | || || ||| Sbjct 63094 TGAATCTTTGACTTCACGTTTTCAATGGTATCACTTGGTTCCACTTCCAAAGTGATGGTT 63153 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || |||||||| || || || || ||||| Sbjct 63154 TTTCCAGTTAAAGTTTTGACGAAAATCTGCAT 63185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354771486073272