Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoplax_20adhaerens_20[refseq_20GCF_5F000150275.1_202008-06-17] 1,414 sequences; 105,631,681 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq1375 134 1e-26 >seq1375 Length=284262 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || || ||||| | ||| |||||||| ||||| |||||||| || ||||||||||||| | Sbjct 63187 CCACCACGTAAGCGCAAAACCAAATGAAGTGTCGATTCTTTCTGGATGTTGTAATCGCTC 63246 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| | |||||| | |||||||| || |||| | | || |||||| || Sbjct 63247 AGAGTGCGACCATCTTCTAGCTGTTTGCCAGCGAAAATTAAACGTTGCTGATCGGGTGGA 63306 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||||||||| |||||| ||| || | ||| | || | |||||| | Sbjct 63307 ATACCTTCTTTGTCTTGAATTTTGGATTTGACGTTTTCAATGGTGTCACTGGGTTCCACT 63366 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | |||||| |||||||| || || || ||||||||||||||||| Sbjct 63367 TCTAAGGTAATCGTTTTGCCAGTTAAAGTCTTGACAAAAATTTGCAT 63413 Score = 127 bits (140), Expect = 2e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055 ||| ||||| || ||||| ||||||||||| || |||||||||| | || || Sbjct 62973 CAATACCAAGTGGAGTGTGGATTCTTTTTGGATATTGTAATCGCTTAATGTACGGCCGTC 63032 Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115 ||||||||||||||| || | ||||| | ||||||||| || | |||||||||||| Sbjct 63033 TTCCAATTGTTTGCCAGCGAATATAAGTCGCTGTTGATCTGGAGGAATGCCTTCTTTGTC 63092 Query 20116 GGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGT 20175 ||| ||| ||||| | ||| | ||| | |||||| ||||| || ||||| Sbjct 63093 TTGAATCTTTGACTTCACGTTTTCAATGGTATCACTTGGTTCCACTTCCAAAGTGATGGT 63152 Query 20176 TTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||| || || || |||||||| ||||| ||||| Sbjct 63153 TTTTCCAGTTAAAGTTTTGACGAAAATCTGCAT 63185 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058 ||| ||||| || || ||||||||||| ||||| || |||| | || |||||| Sbjct 62748 CACTAAATGAAGAGTGGATTCTTTTTGGATGTTATAGTCGCTTAGCGTGCGGCCATCTTC 62807 Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118 |||||| || || || ||||||| | || ||||| || | ||||||||||| Sbjct 62808 CAATTGCTTACCAGCGAAAATAAGACGTTGCTGATCTGGTGGGATACCTTCTTTGTCTTG 62867 Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTT 20178 |||||| ||| || | | | || ||| | ||||| ||| | |||||||||||| Sbjct 62868 AATTTTGGATTTGACATTTTCGATAGTATCACTTGGTTCGACTTCTAAGGTAATGGTTTT 62927 Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || || || || |||||||| || ||||| Sbjct 62928 TCCCGTTAAAGTCTTGACAAATATCTGCAT 62957 Score = 98.7 bits (108), Expect = 8e-16 Identities = 150/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGA--ATCT 20056 ||| ||||| ||||| ||||||||||| ||||| || |||| |||| | | |||| Sbjct 62520 CACTAAATGAAGTGTGGATTCTTTTTGGATGTTATAGTCGCT--TAGTGTGCGGCCATCT 62577 Query 20057 TCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCG 20116 || ||||| || || || |||| || | || ||||| || | ||||||||||| Sbjct 62578 TCTAATTGCTTACCAGCGAAAATCAGACGTTGCTGATCTGGTGGGATACCTTCTTTGTCT 62637 Query 20117 GCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTT 20176 ||||||| ||| || | | | || ||| | ||||| ||||| |||||| ||| Sbjct 62638 TGAATTTTTGATTTGACATTTTCGATAGTATCACTTGGTTCGACTTCCAAGGTAATTGTT 62697 Query 20177 TTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || || || | || ||||| ||||| ||||| Sbjct 62698 TTACCAGTGAGTGTCTTGACGAAAATCTGCAT 62729 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055 ||| || | ||||| || || ||||| || |||||||| |||| || ||| ||| Sbjct 63429 CAAGACAAGATGTAAAGTCGACTCTTTCTGGATGTTGTAGTCGCTCAAAGTACGGCCATC 63488 Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115 ||| || ||||| || || |||| | | |||||||| || | ||||| || || Sbjct 63489 TTCTAACTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATTCCTTCCTTATC 63548 Query 20116 GGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGT 20175 || || ||| || | | | || ||||| || || ||||| |||||||| Sbjct 63549 CTGGATCTTGGATTTGACATTTTCGATAGTATCGCTTGGCTCAACTTCCAAAGTAATGGT 63608 Query 20176 TTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||| || ||||| |||||||| ||||||||||| Sbjct 63609 TTTTCCTGTCAAAGTTTTGACGAAAATTTGCAT 63641 Score = 86.0 bits (94), Expect = 5e-12 Identities = 161/237 (68%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 19972 TTATCATTTTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTT 20031 |||| | || || || || | | || ||||| || ||||||||||| ||||| ||||| Sbjct 62265 TTATTAATTACCACCACGAAGACGCAGTACCAAGTGAAGTGTAGATTCCTTTTGGATGTT 62324 Query 20032 GTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTG 20091 ||| |||| | || | ||||||||| || || || || | || || | || || Sbjct 62325 GTAGTCGCTTAGCGTGCGACCATCTTCCAACTGCTTACCAGCGAAGATGAGACGTTGCTG 62384 Query 20092 ATCGACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCC 20151 ||| || | ||||| || || |||||| ||| || | | | || ||| | Sbjct 62385 ATCTGGTGGAATACCTTCCTTATCTTGAATTTTGGATTTGACATTTTCGATAGTATCACT 62444 Query 20152 AGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||||| ||||| |||||| ||||| || || | || ||||| ||||| ||||| Sbjct 62445 TGGTTCGACTTCCAAGGTAATTGTTTTACCAGTGAGTGTCTTGACGAAAATCTGCAT 62501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419579969201334