Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoplax_20adhaerens_20[refseq_20GCF_5F000150275.1_202008-06-17] 1,414 sequences; 105,631,681 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1375 136 9e-27 seq1385 116 9e-21 seq1412 87.8 4e-12 >seq1375 Length=284262 Score = 136 bits (150), Expect = 9e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| |||| ||| | || |||||||| || || |||||||| ||| || | || || Sbjct 62745 AAGCACTAAATGAAGAGTGGATTCTTTTTGGATGTTATAGTCGCTTAGCGTGCGGCCATC 62804 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| | ||| || ||||| ||||| || | || ||||| || || || |||||||| || Sbjct 62805 TTCCAATTGCTTACCAGCGAAAATAAGACGTTGCTGATCTGGTGGGATACCTTCTTTGTC 62864 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||| || | ||| |||||||| | ||||| || ||||| || |||| ||||| || Sbjct 62865 TTGAATTTTGGATTTGACATTTTCGATAGTATCACTTGGTTCGACTTCTAAGGTAATGGT 62924 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || | || || |||||||||||||| Sbjct 62925 TTTTCCCGTTAAAGTCTTGACAAATATCTGCAT 62957 Score = 134 bits (148), Expect = 3e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 104356 ATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTG 104415 ||| | ||| ||||||||||| || || || || ||||| | ||| |||||||| || Sbjct 63210 ATGAAGTGTCGATTCTTTCTGGATGTTGTAATCGCTCAGAGTGCGACCATCTTCTAGCTG 63269 Query 104416 TTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT 104475 ||| ||||| ||||||| | || ||||| || || || |||||||| || ||||| || Sbjct 63270 TTTGCCAGCGAAAATTAAACGTTGCTGATCGGGTGGAATACCTTCTTTGTCTTGAATTTT 63329 Query 104476 TGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535 | ||| || ||||| | ||| || || ||||| || |||| ||||| || || ||||| Sbjct 63330 GGATTTGACGTTTTCAATGGTGTCACTGGGTTCCACTTCTAAGGTAATCGTTTTGCCAGT 63389 Query 104536 AAGTGTTTTTACAAATATCTGCAT 104559 | || || ||||| || ||||| Sbjct 63390 TAAAGTCTTGACAAAAATTTGCAT 63413 >seq1385 Length=536744 Score = 116 bits (128), Expect = 9e-21 Identities = 88/104 (85%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515 ||||||||||||||||| || | |||||||||||| | ||||||||||||||| |||||| Sbjct 292212 CCTTCTTTATCCTGAATTTTGGATTTTACATTTTCAATGGTATCGCTAGGTTCGACCTCT 292153 Query 104516 AGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || ||||| ||||| | || || ||||| |||||||| Sbjct 292152 AGCGTGATGGTCTTTCCAGTTAAAGTCTTAACAAAAATCTGCAT 292109 >seq1412 Length=9661127 Score = 87.8 bits (96), Expect = 4e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 165257 AGAGCGTGGAATATTAATAAACCTTTACTTTTCTGTCCAGCTATGAATACACTTATGTGG 165316 ||||| ||| || | || ||| | |||||||||||||||||||||| | ||||||| Sbjct 1095108 AGAGCCTGGGATTTGAAACGACCAGTCATTTTCTGTCCAGCTATGAATACTCATATGTGG 1095167 Query 165317 GAACATCCTATTACTGAGCAGCATATAGAAACTCTTAAGCATATGGGGTACATAGAAGTT 165376 ||||||| || ||| | ||||||| | | || || | || ||||| ||||| Sbjct 1095168 AAACATCCAATAACTAGTAATCATATAGCGATATTGAAAAATTTTGGATACATTGAAGTC 1095227 Query 165377 GAGTGTATTGAGAAAAAGCTAGCTTGTGGTGATATTGG 165414 || ||||||||| || || |||||||||| ||| Sbjct 1095228 GAACCAATTGAGAAACGACTGGCATGTGGTGATACTGG 1095265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151377540259112