Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoplax_20adhaerens_20[refseq_20GCF_5F000150275.1_202008-06-17] 1,414 sequences; 105,631,681 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1375 131 2e-25 >seq1375 Length=284262 Score = 131 bits (144), Expect = 2e-25 Identities = 161/220 (73%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 94790 AATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTG 94849 || ||||| ||||| || | || ||||| || || | ||| |||||||||| |||| Sbjct 63196 AAGCGCAAAACCAAATGAAGTGTCGATTCTTTCTGGATGTTGTAATCGCTCAGAGTGCGA 63255 Query 94850 GAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCT 94909 ||| || |||||||| || | || ||||| | ||||||||| || |||||||||||| Sbjct 63256 CCATCTTCTAGCTGTTTGCCAGCGAAAATTAAACGTTGCTGATCGGGTGGAATACCTTCT 63315 Query 94910 TTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTG 94969 ||||| | |||||| | |||||| | | |||||| | | || || || | || Sbjct 63316 TTGTCTTGAATTTTGGATTTGACGTTTTCAATGGTGTCACTGGGTTCCACTTCTAAGGTA 63375 Query 94970 ATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || ||||| ||||| | ||| || ||||| || ||||||| Sbjct 63376 ATCGTTTTGCCAGTTAAAGTCTTGACAAAAATTTGCATGC 63415 Score = 120 bits (132), Expect = 3e-22 Identities = 160/218 (73%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA- 94851 |||| |||||||| | |||||||||||||| | ||| || ||||| ||| || || Sbjct 62287 CGCAGTACCAAGTGAAGTGTAGATTCCTTTTGGATGTTGTAGTCGCT--TAGCGTGCGAC 62344 Query 94852 -ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 ||| |||| ||| || || | ||||| | | |||||||||||| ||||||||||| | Sbjct 62345 CATCTTCCAACTGCTTACCAGCGAAGATGAGACGTTGCTGATCTGGTGGAATACCTTCCT 62404 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTG 94969 | || | |||||| | ||||| ||| ||| ||| | ||| ||||| || | || Sbjct 62405 TATCTTGAATTTTGGATTTGACATTTTCGATAGTATCA-CTTGGTTCGACTTCCAAGGTA 62463 Query 94970 ATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || ||||| ||||| || || || || || |||||||| Sbjct 62464 ATTGTTTTACCAGTGAGTGTCTTGACGAAAATCTGCAT 62501 Score = 116 bits (128), Expect = 3e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||| || || | ||| ||||| ||||| | |||||| ||||| | ||| | ||| || Sbjct 62748 CACTAAATGAAGAGTGGATTCTTTTTGGATGTTATAGTCGCTTAGCGTGCGGCCATCTTC 62807 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || || || || | || || | | |||||||||||| || |||||||||||||| | Sbjct 62808 CAATTGCTTACCAGCGAAAATAAGACGTTGCTGATCTGGTGGGATACCTTCTTTGTCTTG 62867 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGATGGTTT 94976 |||||| | ||||| ||| ||| ||| | ||| ||||| || | || ||||||| Sbjct 62868 AATTTTGGATTTGACATTTTCGATAGTATCA-CTTGGTTCGACTTCTAAGGTAATGGTTT 62926 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| || | ||| || ||||| |||||||| Sbjct 62927 TTCCCGTTAAAGTCTTGACAAATATCTGCAT 62957 Score = 116 bits (128), Expect = 3e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 ||||| |||||||| | || ||||| ||||| | || |||||||| | || | Sbjct 62971 CGCAATACCAAGTGGAGTGTGGATTCTTTTTGGATATTGTAATCGCTTAATGTACGGCCG 63030 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||| ||||| || | || || | || || |||||||||||||| ||||||||| Sbjct 63031 TCTTCCAATTGTTTGCCAGCGAATATAAGTCGCTGTTGATCTGGAGGAATGCCTTCTTTG 63090 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGAT 94971 || | ||| |||| ||| ||| | | || ||| | ||| || || || | ||||| Sbjct 63091 TCTTGAATCTTTGACTTCACGTTTTCAATGGTATCA-CTTGGTTCCACTTCCAAAGTGAT 63149 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||||||||| | |||||| || || |||||||| Sbjct 63150 GGTTTTTCCAGTTAAAGTTTTGACGAAAATCTGCAT 63185 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||| || || | || ||||| ||||| | |||||| ||||| | ||| | ||| || Sbjct 62520 CACTAAATGAAGTGTGGATTCTTTTTGGATGTTATAGTCGCTTAGTGTGCGGCCATCTTC 62579 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 | || || || | || || | | |||||||||||| || |||||||||||||| | Sbjct 62580 TAATTGCTTACCAGCGAAAATCAGACGTTGCTGATCTGGTGGGATACCTTCTTTGTCTTG 62639 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGATGGTTT 94976 |||||||| ||||| ||| ||| ||| | ||| ||||| || | || || |||| Sbjct 62640 AATTTTTGATTTGACATTTTCGATAGTATCA-CTTGGTTCGACTTCCAAGGTAATTGTTT 62698 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| || || || || || |||||||| Sbjct 62699 TACCAGTGAGTGTCTTGACGAAAATCTGCAT 62729 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 ||||| || | || ||||| || || || || | ||| || ||||||| ||| | | Sbjct 63427 CGCAAGACAAGATGTAAAGTCGACTCTTTCTGGATGTTGTAGTCGCTCAAAGTACGGCCA 63486 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || | |||||| || | || || || | ||| |||||||| ||||| ||||| || Sbjct 63487 TCTTCTAACTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATTCCTTCCTTA 63546 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGAT 94971 || | || || | ||||| ||| ||| || || ||| || || || | || || Sbjct 63547 TCCTGGATCTTGGATTTGACATTTTCGATAGTATC-GCTTGGCTCAACTTCCAAAGTAAT 63605 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 ||||||||| || | |||||| || || || |||||| Sbjct 63606 GGTTTTTCCTGTCAAAGTTTTGACGAAAATTTGCATG 63642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448283276453040