Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoplax_20adhaerens_20[refseq_20GCF_5F000150275.1_202008-06-17] 1,414 sequences; 105,631,681 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1411 206 4e-49 >seq1411 Length=8164392 Score = 206 bits (228), Expect = 4e-49 Identities = 206/267 (77%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 ||||||||||| || | | ||||| |||||||||||||| |||||||| ||||||||| Sbjct 1976684 GCTAAGCGTCACCGAAAAATCCTTCGTGATAACATCCAAGGTATCACCAAACCAGCTATC 1976625 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | ||||| || ||||||||||| ||||||||| ||||||| ||| ||||||| || | | Sbjct 1976624 AGACGTCTTGCACGTCGTGGTGGTGTCAAGCGTATCTCTGGCTTGATCTATGAGGAAACT 1976565 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| |||||| | ||| | | | || |||| |||||| | ||| |||||| Sbjct 1976564 CGTGGTGTCTTGAAGGTATTCTTGGAAAATGTAATCCGTGATGCGGTTACCTACACCGAG 1976505 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || ||||||||||| || | ||||| | ||||| || | ||||| ||||| Sbjct 1976504 CACGCCAAGCGTAAGACTGTTACTGCTATGGACGTTGTCTACGCTCTTAAACGCCAAGGA 1976445 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || ||||| || ||||| Sbjct 1976444 CGTACTTTGTACGGTTTCGGTGGTTAA 1976418 Score = 192 bits (212), Expect = 9e-45 Identities = 209/275 (76%), Gaps = 2/275 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTC-GAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| || | | |||| |||||||||||||||| |||||||| ||||| | Sbjct 4626218 CGCAAAGCGTCACCGAAAAA-TCTTAAGAGATAACATCCAAGGTATCACCAAACCAGCAA 4626276 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | |||||| ||||||| |||||||| || |||||| ||||||| || |||| || || | Sbjct 4626277 TTCGTCGTTTGGCTCGCCGTGGTGGTGTTAAGCGTATCTCTGGTTTAATCTACGAGGAAA 4626336 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||| | ||| | || | ||| | | | ||| || | |||||| | || |||| Sbjct 4626337 CTCGAGGTGTCCTCAAAGTTTTCTTGGAAAACGTAATTCGCGATGCTGTTACTTACACCG 4626396 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || | |||||||||||| | |||||| |||||||||| |||||||| |||| Sbjct 4626397 AGCACGCCAAGAGAAAGACTGTCACCGCTATGGATGTCGTCTATGCTTTGAAACGCCAAG 4626456 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAATCTTCT 16705 | |||| | ||||| ||||| ||||| |||| Sbjct 4626457 GACGTACCTTGTATGGCTTTGGTGGTTAAATTTCT 4626491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073907169902