Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoplax_20adhaerens_20[refseq_20GCF_5F000150275.1_202008-06-17] 1,414 sequences; 105,631,681 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1375 125 7e-24 >seq1375 Length=284262 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| ||||||||||| | || || || ||||| ||||| || ||||| Sbjct 62503 CCACCACGAAGACGTAGCACTAAATGAAGTGTGGATTCTTTTTGGATGTTATAGTCGCTT 62562 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || |||| ||||| || ||| | || | ||| ||||| || || ||| Sbjct 62563 AGTGTGCGGCCATCTTCTAATTGCTTACCAGCGAAAATCAGACGTTGCTGATCTGGTGGG 62622 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTG-CTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||||||||| ||| ||| || |||| | || | |||||| | | |||| Sbjct 62623 ATACCTTCTTTGTC-TTGAATTTTTGATTTGACATTTTCGATAGTATCACTTGGTTCGAC 62681 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| |||||||| || || || || |||||||||||||| Sbjct 62682 TTCCAAGGTAATTGTTTTACCAGTGAGTGTCTTGACGAAAATCTGCAT 62729 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || || |||| || ||||| | ||||| || || || ||||||||||||||| Sbjct 63187 CCACCACGTAAGCGCAAAACCAAATGAAGTGTCGATTCTTTCTGGATGTTGTAATCGCTC 63246 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || |||||||| ||||| ||| | |||||||| ||||| || || || Sbjct 63247 AGAGTGCGACCATCTTCTAGCTGTTTGCCAGCGAAAATTAAACGTTGCTGATCGGGTGGA 63306 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| ||||| |||| | || | || || ||| || | Sbjct 63307 ATACCTTCTTTGTCTTGAATTTTGGATTTGACGTTTTCAATGGTGTCACTGGGTTCCACT 63366 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||||| ||||| || |||| ||| || || ||||| |||||| Sbjct 63367 TCTAAGGTAATCGTTTTGCCAGTTAAAGTCTTGACAAAAATTTGCATG 63414 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | |||||| || || || | || || |||||||| |||||||| ||||| Sbjct 62275 CCACCACGAAGACGCAGTACCAAGTGAAGTGTAGATTCCTTTTGGATGTTGTAGTCGCTT 62334 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || | |||||| || ||| |||| | ||| ||||| || || || Sbjct 62335 AGCGTGCGACCATCTTCCAACTGCTTACCAGCGAAGATGAGACGTTGCTGATCTGGTGGA 62394 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| || || ||||| |||| | || | |||||| | | |||| Sbjct 62395 ATACCTTCCTTATCTTGAATTTTGGATTTGACATTTTCGATAGTATCACTTGGTTCGACT 62454 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| |||||||| || || || || |||||||||||||| Sbjct 62455 TCCAAGGTAATTGTTTTACCAGTGAGTGTCTTGACGAAAATCTGCAT 62501 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| ||||||||||| | || || || ||||| ||||| || ||||| Sbjct 62731 CCACCACGAAGACGAAGCACTAAATGAAGAGTGGATTCTTTTTGGATGTTATAGTCGCTT 62790 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || | ||||| || ||| | || | ||| ||||| || || ||| Sbjct 62791 AGCGTGCGGCCATCTTCCAATTGCTTACCAGCGAAAATAAGACGTTGCTGATCTGGTGGG 62850 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| ||||| |||| | || | |||||| | | |||| Sbjct 62851 ATACCTTCTTTGTCTTGAATTTTGGATTTGACATTTTCGATAGTATCACTTGGTTCGACT 62910 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| |||||| || |||| ||| || || || |||||||| Sbjct 62911 TCTAAGGTAATGGTTTTTCCCGTTAAAGTCTTGACAAATATCTGCAT 62957 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||| || || || | || || || ||||| || ||||||||||| Sbjct 62959 CCACCACGAAGACGCAATACCAAGTGGAGTGTGGATTCTTTTTGGATATTGTAATCGCTT 63018 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||| || | || ||||| ||| | || | ||||| || || ||||| Sbjct 63019 AATGTACGGCCGTCTTCCAATTGTTTGCCAGCGAATATAAGTCGCTGTTGATCTGGAGGA 63078 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTG-CTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||||||||| ||| | | || ||| | | || | ||||| | | || | Sbjct 63079 ATGCCTTCTTTGTC-TTGAATCTTTGACTTCACGTTTTCAATGGTATCACTTGGTTCCAC 63137 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | |||||| || |||| |||||| |||||||||||||| Sbjct 63138 TTCCAAAGTGATGGTTTTTCCAGTTAAAGTTTTGACGAAAATCTGCAT 63185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472004457173760