Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoplax_20adhaerens_20[refseq_20GCF_5F000150275.1_202008-06-17] 1,414 sequences; 105,631,681 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq1394 140 2e-28 seq1377 140 2e-28 seq1367 140 2e-28 seq1375 129 4e-25 seq1025 113 3e-20 seq1409 95.1 8e-15 >seq1394 Length=981283 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 18289 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 18348 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 18349 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 18383 Score = 113 bits (124), Expect = 3e-20 Identities = 71/77 (92%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 31618 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 31677 Query 20007 GGTAATATTTAGCCTTA 20023 | ||||||||| ||| Sbjct 31678 GTCTATATTTAGCTTTA 31694 >seq1377 Length=314745 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 4329 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 4388 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 4389 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 4423 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 118545 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 118486 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 118485 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 118451 Score = 113 bits (124), Expect = 3e-20 Identities = 71/77 (92%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 6891 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 6950 Query 20007 GGTAATATTTAGCCTTA 20023 | ||||||||| ||| Sbjct 6951 GTCTATATTTAGCTTTA 6967 Score = 113 bits (124), Expect = 3e-20 Identities = 71/77 (92%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 116452 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 116393 Query 20007 GGTAATATTTAGCCTTA 20023 | ||||||||| ||| Sbjct 116392 GTCTATATTTAGCTTTA 116376 >seq1367 Length=51388 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 724 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 783 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 784 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 818 Score = 113 bits (124), Expect = 3e-20 Identities = 71/77 (92%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 2324 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 2383 Query 20007 GGTAATATTTAGCCTTA 20023 | ||||||||| ||| Sbjct 2384 GTCTATATTTAGCTTTA 2400 >seq1375 Length=284262 Score = 129 bits (142), Expect = 4e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | |||||| ||||| || || ||| || ||||| ||||||||||| Sbjct 62957 TACCACCACGAAGACGCAATACCAAGTGGAGTGTGGATTCTTTTTGGATATTGTAATCGC 63016 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 || ||| |||| || |||||||| || || ||||| || || |||||||| | | Sbjct 63017 TTAATGTACGGCCGTCTTCCAATTGTTTGCCAGCGAATATAAGTCGCTGTTGATCTGGAG 63076 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||||||||| ||| ||| |||||| || | | ||||| | ||| | Sbjct 63077 GAATGCCTTCTTTGTCTTGAATCTTTGACTTCACGTTTTCAATGGTATCACTTGGTTCCA 63136 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || || || ||||| || || || ||||| ||||| |||||||| Sbjct 63137 CTTCCAAAGTGATGGTTTTTCCAGTTAAAGTTTTGACGAAAATCTGCAT 63185 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | ||| |||||||| ||| || ||||| || || || || Sbjct 62501 TACCACCACGAAGACGTAGCACTAAATGAAGTGTGGATTCTTTTTGGATGTTATAGTCGC 62560 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | || | || |||||||| || || || || || || ||||| ||||| | | Sbjct 62561 TTAGTGTGCGGCCATCTTCTAATTGCTTACCAGCGAAAATCAGACGTTGCTGATCTGGTG 62620 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||||||||| ||||||| || ||||| | || |||||| | ||| | Sbjct 62621 GGATACCTTCTTTGTCTTGAATTTTTGATTTGACATTTTCGATAGTATCACTTGGTTCGA 62680 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || ||||| |||||||| || | || || ||||| |||||||| Sbjct 62681 CTTCCAAGGTAATTGTTTTACCAGTGAGTGTCTTGACGAAAATCTGCAT 62729 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | | ||| | ||| |||||||||||| || ||||| || || || || Sbjct 62731 CCACCACGAAGACGAAGCACTAAATGAAGAGTGGATTCTTTTTGGATGTTATAGTCGCTT 62790 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || | || || ||||| || || || || || || ||||| ||||| | ||| Sbjct 62791 AGCGTGCGGCCATCTTCCAATTGCTTACCAGCGAAAATAAGACGTTGCTGATCTGGTGGG 62850 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||||||||| |||||| || ||||| | || |||||| | ||| ||| Sbjct 62851 ATACCTTCTTTGTCTTGAATTTTGGATTTGACATTTTCGATAGTATCACTTGGTTCGACT 62910 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||| ||||| ||||| ||||| || || || || ||||||||||| Sbjct 62911 TCTAAGGTAATGGTTTTTCCCGTTAAAGTCTTGACAAATATCTGCAT 62957 Score = 98.7 bits (108), Expect = 7e-16 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161 |||||| || | ||| | ||| ||| || || || ||||| || |||| ||| | Sbjct 63426 ACGCAAGACAAGATGTAAAGTCGACTCTTTCTGGATGTTGTAGTCGCTCAAAGTACGGCC 63485 Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221 || ||||| ||||| || || || || | ||||||||||| | || | ||||| || Sbjct 63486 ATCTTCTAACTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATTCCTTCCTT 63545 Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAAT 38281 ||| || || || ||||| | || |||||| | |||||||| || ||||| Sbjct 63546 ATCCTGGATCTTGGATTTGACATTTTCGATAGTATCGCTTGGCTCAACTTCCAAAGTAAT 63605 Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 ||||| || ||||| ||||| ||||| || |||||| Sbjct 63606 GGTTTTTCCTGTCAAAGTTTTGACGAAAATTTGCATG 63642 Score = 95.1 bits (104), Expect = 8e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | || ||||| ||||||||||| || || || || || |||||||| Sbjct 63185 TACCACCACGTAAGCGCAAAACCAAATGAAGTGTCGATTCTTTCTGGATGTTGTAATCGC 63244 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 || | || | || |||| ||||| || || || |||| ||||| ||||||| | Sbjct 63245 TCAGAGTGCGACCATCTTCTAGCTGTTTGCCAGCGAAAATTAAACGTTGCTGATCGGGTG 63304 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||||||||| |||||| || || || | | || || | ||| | Sbjct 63305 GAATACCTTCTTTGTCTTGAATTTTGGATTTGACGTTTTCAATGGTGTCACTGGGTTCCA 63364 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 ||||||| ||||| ||||| || || || || || || || || |||||| Sbjct 63365 CTTCTAAGGTAATCGTTTTGCCAGTTAAAGTCTTGACAAAAATTTGCATG 63414 >seq1025 Length=4694 Score = 113 bits (124), Expect = 3e-20 Identities = 71/77 (92%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 77 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 136 Query 20007 GGTAATATTTAGCCTTA 20023 | ||||||||| ||| Sbjct 137 GTCTATATTTAGCTTTA 153 >seq1409 Length=5978658 Score = 95.1 bits (104), Expect = 8e-15 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 6321 CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAG 6380 || ||||| ||||| || || |||||||| ||||| || || || ||| ||||| || Sbjct 1542021 CCCACGAAGTATTTTGGTTGTGAACTTGGAGCTCAAACTCAATTAGATAGTAAAAATGAT 1541962 Query 6381 CGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTT 6440 |||| ||||| || ||||| || | | || ||||||| |||| ||||||||| Sbjct 1541961 CGCTATATCGTCAATGGATCTCACGATGGGTCGAAATTGCAGGAAATACTAGACGGCTTT 1541902 Query 6441 ATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGA 6487 ||| |||||||| || |||| ||||| || || || || || || Sbjct 1541901 ATTAAGAAGTTTGTTCTATGTCCAGAATGTGAAAATCCTGAAACTGA 1541855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334941427813034