Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoplax_20adhaerens_20[refseq_20GCF_5F000150275.1_202008-06-17] 1,414 sequences; 105,631,681 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1375 143 2e-29 >seq1375 Length=284262 Score = 143 bits (158), Expect = 2e-29 Identities = 161/213 (76%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| |||||||| || || ||| | || || | |||||||| | | Sbjct 63413 ATGCAAATTTTTGTCAAGACTTTAACTGGCAAAACGATTACCTTAGAAGTGGAACCCAGT 63354 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || |||| || | |||| ||| ||||||||||| |||||||| || Sbjct 63353 GACACCATTGAAAACGTCA---AATCCAAAATTCAA-GACAAAGAAGGTATTCCACCCGA 63298 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || || || | ||||| || |||||||| ||||||||| ||||||| || ||||||| Sbjct 63297 TCAGCAACGTTTAATTTTCGCTGGCAAACAGCTAGAAGATGGTCGCACTCTGAGCGATTA 63238 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGT 25207 ||| || || |||||||| || || ||||| || Sbjct 63237 CAACATCCAGAAAGAATCGACACTTCATTTGGT 63205 Score = 140 bits (154), Expect = 3e-28 Identities = 162/216 (75%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| |||||||| || || ||| |||| || | ||||| || | | Sbjct 62957 ATGCAGATATTTGTCAAGACTTTAACGGGAAAAACCATTACCTTAGAAGTCGAACCAAGT 62898 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || |||||||| |||| || | |||| ||| ||||||||||| || ||||| || Sbjct 62897 GATACTATCGAAAATGTCA---AATCCAAAATTCAA-GACAAAGAAGGTATCCCACCAGA 62842 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || || || ||||||| || || || ||||| ||||||| ||||| | |||| || Sbjct 62841 TCAGCAACGTCTTATTTTCGCTGGTAAGCAATTGGAAGATGGCCGCACGCTAAGCGACTA 62782 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || |||||||||||||| || ||||||||||| Sbjct 62781 TAACATCCAAAAAGAATCCACTCTTCATTTAGTGCT 62746 Score = 132 bits (146), Expect = 4e-26 Identities = 157/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || ||||| || || ||| ||||||| | |||||||| | | Sbjct 63185 ATGCAGATTTTCGTCAAAACTTTAACTGGAAAAACCATCACTTTGGAAGTGGAACCAAGT 63126 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || ||||| |||| | ||| ||||||||||| ||||| || || || Sbjct 63125 GATACCATTGAAAACGTGAAGTCAAAGATTCAA-GACAAAGAAGGCATTCCTCCAGATCA 63067 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| |||| || || ||||||||||| ||||| | || || | |||||||||| Sbjct 63066 ACAGCGACTTATATTCGCTGGCAAACAATTGGAAGACGGCCGTACATTAAGCGATTACAA 63007 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGT 25207 ||| |||||||||||||| || || || || Sbjct 63006 TATCCAAAAAGAATCCACACTCCACTTGGT 62977 Score = 129 bits (142), Expect = 5e-25 Identities = 160/217 (74%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || |||||| | || || | ||||| || | | Sbjct 62729 ATGCAGATTTTCGTCAAGACACTCACTGGTAAAACAATTACCTTGGAAGTCGAACCAAGT 62670 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || |||||||| |||| || |||||| ||| ||||||||||| || ||||| || Sbjct 62669 GATACTATCGAAAATGTCA---AATCAAAAATTCAA-GACAAAGAAGGTATCCCACCAGA 62614 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || || || | ||||| || || || ||||||||||||| ||||| | |||| || Sbjct 62613 TCAGCAACGTCTGATTTTCGCTGGTAAGCAATTAGAAGATGGCCGCACACTAAGCGACTA 62554 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 || || |||||||||||||| || |||||||||||| Sbjct 62553 TAACATCCAAAAAGAATCCACACTTCATTTAGTGCTA 62517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433320532404410