Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoplax_20adhaerens_20[refseq_20GCF_5F000150275.1_202008-06-17] 1,414 sequences; 105,631,681 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1375 181 9e-41 >seq1375 Length=284262 Score = 181 bits (200), Expect = 9e-41 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| || |||||||| || |||||| | || | ||||||||| ||| Sbjct 63413 ATGCAAATTTTTGTCAAGACTTTAACTGGCAAAACGATTACCTTAGAAGTGGAACCCAGT 63354 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | ||||| |||||||||||||| || ||||||||||||||||| Sbjct 63353 GACACCATTGAAAACGTCAAATCCAAAATTCAAGACAAAGAAGGTATTCCACCCGATCAG 63294 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || || || ||||||||| |||| ||| ||||| | |||||||||| Sbjct 63293 CAACGTTTAATTTTCGCTGGCAAACAGCTAGAAGATGGTCGCACTCTGAGCGATTACAAC 63234 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || |||||||| || | ||||| |||||||| || || || ||| Sbjct 63233 ATCCAGAAAGAATCGACACTTCATTTGGTTTTGCGCTTACGTGGTGGT 63186 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || ||||||||||| || ||||| ||||| | ||||||||| | | Sbjct 63185 ATGCAGATTTTCGTCAAAACTTTAACTGGAAAAACCATCACTTTGGAAGTGGAACCAAGT 63126 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | | || ||| ||||||||||| || || ||||| || |||||| Sbjct 63125 GATACCATTGAAAACGTGAAGTCAAAGATTCAAGACAAAGAAGGCATTCCTCCAGATCAA 63066 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || |||||||| || |||||||| || || || ||| || | ||||||||| Sbjct 63065 CAGCGACTTATATTCGCTGGCAAACAATTGGAAGACGGCCGTACATTAAGCGATTACAAT 63006 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || |||||||||||||| | || || || ||||| | || || ||| Sbjct 63005 ATCCAAAAAGAATCCACACTCCACTTGGTATTGCGTCTTCGTGGTGGT 62958 Score = 143 bits (158), Expect = 2e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || |||||||| || ||||| | || | ||||| ||| | | Sbjct 62957 ATGCAGATATTTGTCAAGACTTTAACGGGAAAAACCATTACCTTAGAAGTCGAACCAAGT 62898 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || ||||| |||||||||||||| || ||||| ||||| ||||| Sbjct 62897 GATACTATCGAAAATGTCAAATCCAAAATTCAAGACAAAGAAGGTATCCCACCAGATCAG 62838 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||||||||| || || || || || || || ||| |||||| | ||| || ||| Sbjct 62837 CAACGTCTTATTTTCGCTGGTAAGCAATTGGAAGATGGCCGCACGCTAAGCGACTATAAC 62778 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || |||||||||||||| | |||||||| Sbjct 62777 ATCCAAAAAGAATCCACTCTTCATTTAGT 62749 Score = 140 bits (154), Expect = 3e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| ||||| || || || | || |||||||| | || | ||||| ||| | | Sbjct 62730 GATGCAGATTTTCGTCAAGACACTCACTGGTAAAACAATTACCTTGGAAGTCGAACCAAG 62671 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||||| | || || ||||| ||||||||||||||| || ||||| ||||| ||||| Sbjct 62670 TGATACTATCGAAAATGTCAAATCAAAAATTCAAGACAAAGAAGGTATCCCACCAGATCA 62611 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 |||||||| || || || || || || ||||| ||| |||||| | ||| || || Sbjct 62610 GCAACGTCTGATTTTCGCTGGTAAGCAATTAGAAGATGGCCGCACACTAAGCGACTATAA 62551 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGT 22427 ||| |||||||||||||| | |||||||| Sbjct 62550 CATCCAAAAAGAATCCACACTTCATTTAGT 62521 Score = 136 bits (150), Expect = 3e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || |||||||| || || ||||| | ||| | ||||| || | | | Sbjct 63641 ATGCAAATTTTCGTCAAAACTTTGACAGGAAAAACCATTACTTTGGAAGTTGAGCCAAGC 63582 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || ||||| || || || || ||||| || |||||||| |||||| Sbjct 63581 GATACTATCGAAAATGTCAAATCCAAGATCCAGGATAAGGAAGGAATTCCACCAGATCAA 63522 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || || || || ||||||||||| ||| ||| || | ||| |||||| Sbjct 63521 CAACGTTTGATTTTCGCTGGTAAACAGTTAGAAGATGGCCGTACTTTGAGCGACTACAAC 63462 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 || || ||||| || || ||||| | || ||||| Sbjct 63461 ATCCAGAAAGAGTCGACTTTACATCTTGTCTTGCG 63427 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | || |||||||| | || | ||||| ||| | | Sbjct 62501 ATGCAGATTTTCGTCAAGACACTCACTGGTAAAACAATTACCTTGGAAGTCGAACCAAGT 62442 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || ||||| ||||||||||| ||||| ||||||||||| ||||| Sbjct 62441 GATACTATCGAAAATGTCAAATCCAAAATTCAAGATAAGGAAGGTATTCCACCAGATCAG 62382 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || || || || || ||||| || ||| ||||| | ||| |||||| Sbjct 62381 CAACGTCTCATCTTCGCTGGTAAGCAGTTGGAAGATGGTCGCACGCTAAGCGACTACAAC 62322 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||| ||||| || | || || || |||| | || || ||| Sbjct 62321 ATCCAAAAGGAATCTACACTTCACTTGGTACTGCGTCTTCGTGGTGGT 62274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419720766774910