Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoplax_20adhaerens_20[refseq_20GCF_5F000150275.1_202008-06-17] 1,414 sequences; 105,631,681 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1375 197 3e-45 >seq1375 Length=284262 Score = 197 bits (218), Expect = 3e-45 Identities = 180/227 (79%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| |||||||||||||| || ||||| ||||||||||| || |||||| Sbjct 62959 CCACCACGAAGACGCAATACCAAGTGGAGTGTGGATTCTTTTTGGATATTGTAATCGCTT 63018 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | ||| | || ||||| || || || || |||||||| |||| ||||| || || ||| Sbjct 63019 AATGTACGGCCGTCTTCCAATTGTTTGCCAGCGAATATAAGTCGCTGTTGATCTGGAGGA 63078 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||| |||||||||||||||| ||| ||| || ||||| || || ||| ||| Sbjct 63079 ATGCCTTCTTTGTCTTGAATCTTTGACTTCACGTTTTCAATGGTATCACTTGGTTCCACT 63138 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| |||||||||||||| || | || |||||||| |||||||| Sbjct 63139 TCCAAAGTGATGGTTTTTCCAGTTAAAGTTTTGACGAAAATCTGCAT 63185 Score = 192 bits (212), Expect = 1e-43 Identities = 183/234 (78%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 68228 TTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATA 68287 |||||| || || ||||| |||| ||||||||| || || || || ||||||||||| || Sbjct 62268 TTAATTACCACCACGAAGACGCAGTACCAAGTGAAGTGTAGATTCCTTTTGGATGTTGTA 62327 Query 68288 ATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTC 68347 ||| || || | |||||||| |||||||| || ||||| ||||| | ||| || || Sbjct 62328 GTCGCTTAGCGTGCGACCATCTTCCAACTGCTTACCAGCGAAGATGAGACGTTGCTGATC 62387 Query 68348 GGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGA 68407 |||||||| |||||||| |||||||| || | ||||| ||||| || || || Sbjct 62388 TGGTGGAATACCTTCCTTATCTTGAATTTTGGATTTGACATTTTCGATAGTATCACTTGG 62447 Query 68408 TTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||| ||||||||||| || ||||| || ||||| ||||||||||| |||||||| Sbjct 62448 TTCGACTTCCAAGGTAATTGTTTTACCAGTGAGTGTCTTGACGAAAATCTGCAT 62501 Score = 179 bits (198), Expect = 7e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | || || || || ||||| ||||||||||||||||| ||| Sbjct 62503 CCACCACGAAGACGTAGCACTAAATGAAGTGTGGATTCTTTTTGGATGTTATAGTCGCTT 62562 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||||| | ||||||||||| ||||| || ||||| || || | ||| || || ||||| Sbjct 62563 AGTGTGCGGCCATCTTCTAATTGCTTACCAGCGAAAATCAGACGTTGCTGATCTGGTGGG 62622 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| ||||||||||| |||| ||||| ||||| || || || ||| ||| Sbjct 62623 ATACCTTCTTTGTCTTGAATTTTTGATTTGACATTTTCGATAGTATCACTTGGTTCGACT 62682 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||| || ||||| || ||||| ||||||||||| |||||||| Sbjct 62683 TCCAAGGTAATTGTTTTACCAGTGAGTGTCTTGACGAAAATCTGCAT 62729 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | || || || || ||||| ||||||||||||||||| ||| Sbjct 62731 CCACCACGAAGACGAAGCACTAAATGAAGAGTGGATTCTTTTTGGATGTTATAGTCGCTT 62790 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| || ||||| || ||||| || || | ||| || || ||||| Sbjct 62791 AGCGTGCGGCCATCTTCCAATTGCTTACCAGCGAAAATAAGACGTTGCTGATCTGGTGGG 62850 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| ||||||||||| || | ||||| ||||| || || || ||| ||| Sbjct 62851 ATACCTTCTTTGTCTTGAATTTTGGATTTGACATTTTCGATAGTATCACTTGGTTCGACT 62910 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || ||||| |||||||||||||| | |||||||| ||||||||||| Sbjct 62911 TCTAAGGTAATGGTTTTTCCCGTTAAAGTCTTGACAAATATCTGCAT 62957 Score = 152 bits (168), Expect = 9e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || | |||||| ||||| || || || || ||||| |||||||| |||||| Sbjct 63187 CCACCACGTAAGCGCAAAACCAAATGAAGTGTCGATTCTTTCTGGATGTTGTAATCGCTC 63246 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||||| ||| || || ||||| || | | ||| || ||||||||| Sbjct 63247 AGAGTGCGACCATCTTCTAGCTGTTTGCCAGCGAAAATTAAACGTTGCTGATCGGGTGGA 63306 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| ||||||||||| || | |||||| || |||||||| | ||| ||| Sbjct 63307 ATACCTTCTTTGTCTTGAATTTTGGATTTGACGTTTTCAATGGTGTCACTGGGTTCCACT 63366 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || ||||| || ||||| || || | |||||||| || || ||||| Sbjct 63367 TCTAAGGTAATCGTTTTGCCAGTTAAAGTCTTGACAAAAATTTGCAT 63413 Score = 141 bits (156), Expect = 2e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || ||||| || | |||| || |||||||| |||||||| || ||| Sbjct 63415 CCGCCACGGAGACGCAAGACAAGATGTAAAGTCGACTCTTTCTGGATGTTGTAGTCGCTC 63474 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | |||||||||||||| || || ||||| || | | |||||| || |||||| Sbjct 63475 AAAGTACGGCCATCTTCTAACTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGTGGA 63534 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||| || || ||||| | ||||| ||||| || || || || ||| Sbjct 63535 ATTCCTTCCTTATCCTGGATCTTGGATTTGACATTTTCGATAGTATCGCTTGGCTCAACT 63594 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 ||||| || ||||||||||| || | || |||||||| || ||||| ||| Sbjct 63595 TCCAAAGTAATGGTTTTTCCTGTCAAAGTTTTGACGAAAATTTGCATGATG 63645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921606110324080