Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoplax_20adhaerens_20[refseq_20GCF_5F000150275.1_202008-06-17] 1,414 sequences; 105,631,681 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1375 125 7e-24 seq1402 89.7 5e-13 >seq1375 Length=284262 Score = 125 bits (138), Expect = 7e-24 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 64240 ATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTG 64299 ||||| ||||||||||| || ||||||||||| | ||||| | ||||| ||||| Sbjct 63210 ATGAAGTGTCGATTCTTTCTGGATGTTGTAATCGCTCAGAGTGCGACCATCTTCTAGCTG 63269 Query 64300 CTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 ||||| || |||| | || ||||| ||||| ||||| |||||||| ||||| ||||| Sbjct 63270 TTTGCCAGCGAAAATTAAACGTTGCTGATCGGGTGGAATACCTTCTTTGTCTTGAATTTT 63329 Query 64360 TTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 || || || | || |||| || |||||||||| || | || ||||| || Sbjct 63330 GGATTTGACGTTTTCAATGGTGTCACTGGGTTCCACTTCTAAGGTAATCGTTTTGCCAGT 63389 Query 64420 CAAAGTTTTTACGAAAATTTGCAT 64443 ||||| || || ||||||||||| Sbjct 63390 TAAAGTCTTGACAAAAATTTGCAT 63413 Score = 116 bits (128), Expect = 4e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||||||||| || |||||||| | || || ||||||| | || ||||| Sbjct 62989 GTGGATTCTTTTTGGATATTGTAATCGCTTAATGTACGGCCGTCTTCCAATTGTTTGCCA 63048 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || || ||||| || || |||||||| |||||||| ||||| || ||| ||| Sbjct 63049 GCGAATATAAGTCGCTGTTGATCTGGAGGAATGCCTTCTTTGTCTTGAATCTTTGACTTC 63108 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || || | ||||||| | |||||||| | ||| | ||| || || || |||||| Sbjct 63109 ACGTTTTCAATGGTATCACTTGGTTCCACTTCCAAAGTGATGGTTTTTCCAGTTAAAGTT 63168 Query 64427 TTTACGAAAATTTGCAT 64443 || |||||||| ||||| Sbjct 63169 TTGACGAAAATCTGCAT 63185 Score = 105 bits (116), Expect = 7e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 |||||||| ||||| || ||||||||||| ||||| || || | ||||| | || Sbjct 62745 AAGCACTAAATGAAGAGTGGATTCTTTTTGGATGTTATAGTCGCTTAGCGTGCGGCCATC 62804 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| | ||||| || || |||| || || ||||| || || || || |||||||| || Sbjct 62805 TTCCAATTGCTTACCAGCGAAAATAAGACGTTGCTGATCTGGTGGGATACCTTCTTTGTC 62864 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| ||||| || ||| || | ||||||| | || ||||||| || | ||| Sbjct 62865 TTGAATTTTGGATTTGACATTTTCGATAGTATCACTTGGTTCGACTTCTAAGGTAATGGT 62924 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || || ||||| || || || || ||||| Sbjct 62925 TTTTCCCGTTAAAGTCTTGACAAATATCTGCAT 62957 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||||| ||||| || ||||||||||| ||||| || || | ||||| | ||| Sbjct 62518 AGCACTAAATGAAGTGTGGATTCTTTTTGGATGTTATAGTCGCTTAGTGTGCGGCCATCT 62577 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | ||||| || || |||| || || ||||| || || || || |||||||| ||| Sbjct 62578 TCTAATTGCTTACCAGCGAAAATCAGACGTTGCTGATCTGGTGGGATACCTTCTTTGTCT 62637 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || |||||| || ||| || | ||||||| | || ||||| | || | || Sbjct 62638 TGAATTTTTGATTTGACATTTTCGATAGTATCACTTGGTTCGACTTCCAAGGTAATTGTT 62697 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || || | || || |||||||| ||||| Sbjct 62698 TTACCAGTGAGTGTCTTGACGAAAATCTGCAT 62729 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 || ||||| | ||||| ||||| || |||||||| || | || || | ||||| Sbjct 63433 ACAAGATGTAAAGTCGACTCTTTCTGGATGTTGTAGTCGCTCAAAGTACGGCCATCTTCT 63492 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 | ||| || || || |||| | || || || || || ||||||||||| || || || Sbjct 63493 AACTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATTCCTTCCTTATCCTGG 63552 Query 64355 ATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTG 64414 || || || ||| || | ||||| | | || ||||| | ||| | ||| || Sbjct 63553 ATCTTGGATTTGACATTTTCGATAGTATCGCTTGGCTCAACTTCCAAAGTAATGGTTTTT 63612 Query 64415 CCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || ||||||||||| |||||||||||||| Sbjct 63613 CCTGTCAAAGTTTTGACGAAAATTTGCAT 63641 >seq1402 Length=1917717 Score = 89.7 bits (98), Expect = 5e-13 Identities = 85/106 (80%), Gaps = 2/106 (2%) Strand=Plus/Minus Query 154854 AAACCGGGACAG-CGGTCGGGACACATCAATGACCACATTTCGTTTTGTTGTACGCGTTT 154912 ||||| ||||| | ||||| ||||| || ||||| | | |||||| || || ||||| Sbjct 1403073 AAACCTGGACAATCATTCGGG-CACATTAACGACCATACTCCGTTTTCTTCAACTCGTTT 1403015 Query 154913 CATAAACAAATCCGGCACCCACAAAGCGTACAACAAATCACGCGCC 154958 ||||||||||||||||| ||||| || || |||||||| |||||| Sbjct 1403014 CATAAACAAATCCGGCATCCACATTGCATAAAACAAATCTCGCGCC 1402969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499635968778160