Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoplax_20adhaerens_20[refseq_20GCF_5F000150275.1_202008-06-17] 1,414 sequences; 105,631,681 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1375 150 2e-31 >seq1375 Length=284262 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| ||||| ||||| |||||||| | || || ||||| || || |||||||||| | Sbjct 63187 CCACCACGTAAGCGCAAAACCAAATGAAGTGTCGATTCTTTCTGGATGTTGTAATCGCTC 63246 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| ||||||||||| |||||| | || || || ||||||||||| || Sbjct 63247 AGAGTGCGACCATCTTCTAGCTGTTTGCCAGCGAAAATTAAACGTTGCTGATCGGGTGGA 63306 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || || ||||| ||||| |||| | ||| | |||||| | || ||| Sbjct 63307 ATACCTTCTTTGTCTTGAATTTTGGATTTGACGTTTTCAATGGTGTCACTGGGTTCCACT 63366 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | ||| | ||||||||| || | ||| || |||||||| |||||| Sbjct 63367 TCTAAGGTAATCGTTTTGCCAGTTAAAGTCTTGACAAAAATTTGCATG 63414 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| ||||| || | ||||| || ||||| || ||||| |||| Sbjct 62275 CCACCACGAAGACGCAGTACCAAGTGAAGTGTAGATTCCTTTTGGATGTTGTAGTCGCTT 62334 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||||| ||| || | ||| || |||||| |||| | || |||||||| || || Sbjct 62335 AGCGTGCGACCATCTTCCAACTGCTTACCAGCGAAGATGAGACGTTGCTGATCTGGTGGA 62394 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || ||||| || ||||| |||| | ||||| || || | |||||| Sbjct 62395 ATACCTTCCTTATCTTGAATTTTGGATTTGACATTTTCGATAGTATCACTTGGTTCGACT 62454 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | ||||| || || || || || || ||||||||||| Sbjct 62455 TCCAAGGTAATTGTTTTACCAGTGAGTGTCTTGACGAAAATCTGCAT 62501 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||||| ||||| || | || || |||||||| ||||||||||||| Sbjct 62959 CCACCACGAAGACGCAATACCAAGTGGAGTGTGGATTCTTTTTGGATATTGTAATCGCTT 63018 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || | ||||| |||||| | || | |||||| ||||| ||||| Sbjct 63019 AATGTACGGCCGTCTTCCAATTGTTTGCCAGCGAATATAAGTCGCTGTTGATCTGGAGGA 63078 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||| || |||| | ||| | | || ||| | | ||| | ||| || | || || Sbjct 63079 ATGCCTTCTTTGT-CTTGAATCTTTGACTTCACGTTTTCAATGGTATCACTTGGTTCCAC 63137 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | ||||| || || | |||||| || ||||||||||| Sbjct 63138 TTCCAAAGTGATGGTTTTTCCAGTTAAAGTTTTGACGAAAATCTGCAT 63185 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||| ||||| | || || |||||||| || || || |||| Sbjct 62503 CCACCACGAAGACGTAGCACTAAATGAAGTGTGGATTCTTTTTGGATGTTATAGTCGCTT 62562 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| |||| || || |||||| | |||| || |||||||| || || Sbjct 62563 AGTGTGCGGCCATCTTCTAATTGCTTACCAGCGAAAATCAGACGTTGCTGATCTGGTGGG 62622 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTT-GAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || || ||||| ||| ||| || || || | ||||| || || | ||||| Sbjct 62623 ATACCTTCTTTGTCT-TGAATTTTTGATTTGACATTTTCGATAGTATCACTTGGTTCGAC 62681 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | ||| | ||||| || || || || || || ||||||||||| Sbjct 62682 TTCCAAGGTAATTGTTTTACCAGTGAGTGTCTTGACGAAAATCTGCAT 62729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475492395523360