Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoplax_20adhaerens_20[refseq_20GCF_5F000150275.1_202008-06-17] 1,414 sequences; 105,631,681 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1375 129 5e-25 >seq1375 Length=284262 Score = 129 bits (142), Expect = 5e-25 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 45128 CAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATC 45187 ||| || | ||| || || ||||| || ||||| || |||||||| | || | ||| Sbjct 63201 CAAAACCAAATGAAGTGTCGATTCTTTCTGGATGTTGTAATCGCTCAGAGTGCGACCATC 63260 Query 45188 GTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATC 45247 || | ||||| || ||| | || || |||||||| || || ||||| |||||||| || Sbjct 63261 TTCTAGCTGTTTGCCAGCGAAAATTAAACGTTGCTGATCGGGTGGAATACCTTCTTTGTC 63320 Query 45248 TTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGT 45307 ||||||||| ||||| ||| | |||||| | || ||||| | |||| ||| Sbjct 63321 TTGAATTTTGGATTTGACGTTTTCAATGGTGTCACTGGGTTCCACTTCTAAGGTAATCGT 63380 Query 45308 TTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348 |||||| |||| ||| || |||||||||||||| ||| || Sbjct 63381 TTTGCCAGTTAAAGTCTTGACAAAAATTTGCATGCCGCCAC 63421 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | ||| || | || || || ||||| ||||||||||| |||||| Sbjct 62956 ATACCACCACGAAGACGCAATACCAAGTGGAGTGTGGATTCTTTTTGGATATTGTAATCG 63015 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || | || || ||||||||||| || ||| |||| | ||| || || || || Sbjct 63016 CTTAATGTACGGCCGTCTTCCAATTGTTTGCCAGCGAATATAAGTCGCTGTTGATCTGGA 63075 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 |||||||||||||| |||||||| ||| || | ||| | ||| || | || Sbjct 63076 GGAATGCCTTCTTTGTCTTGAATCTTTGACTTCACGTTTTCAATGGTATCACTTGGTTCC 63135 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | ||| | ||||| || |||| |||||| || ||||| ||||| Sbjct 63136 ACTTCCAAAGTGATGGTTTTTCCAGTTAAAGTTTTGACGAAAATCTGCAT 63185 Score = 111 bits (122), Expect = 1e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||||| ||| || || ||||| |||||||| ||||| ||||| | || ||| || Sbjct 62520 CACTAAATGAAGTGTGGATTCTTTTTGGATGTTATAGTCGCTTAGTGTGCGGCCATCTTC 62579 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 ||||| || || ||| | |||| |||||||| || || || || |||||||| ||||| Sbjct 62580 TAATTGCTTACCAGCGAAAATCAGACGTTGCTGATCTGGTGGGATACCTTCTTTGTCTTG 62639 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 ||||||| ||||| ||| | || || | |||||||| | |||| ||||| Sbjct 62640 AATTTTTGATTTGACATTTTCGATAGTATCACTTGGTTCGACTTCCAAGGTAATTGTTTT 62699 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || || || || ||||| |||||| Sbjct 62700 ACCAGTGAGTGTCTTGACGAAAATCTGCATC 62730 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||||| ||| || || ||||| |||||||| ||||| ||||| | || ||| || Sbjct 62748 CACTAAATGAAGAGTGGATTCTTTTTGGATGTTATAGTCGCTTAGCGTGCGGCCATCTTC 62807 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 |||||| || || ||| | || | |||||||| || || || || |||||||| ||||| Sbjct 62808 CAATTGCTTACCAGCGAAAATAAGACGTTGCTGATCTGGTGGGATACCTTCTTTGTCTTG 62867 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 |||||| ||||| ||| | || || | |||||||| | |||| ||||| Sbjct 62868 AATTTTGGATTTGACATTTTCGATAGTATCACTTGGTTCGACTTCTAAGGTAATGGTTTT 62927 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || |||| ||| || ||||| || ||||| Sbjct 62928 TCCCGTTAAAGTCTTGACAAATATCTGCAT 62957 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | ||| || ||||| | || || || || ||||| || || ||| Sbjct 63412 ATGCCGCCACGGAGACGCAAGACAAGATGTAAAGTCGACTCTTTCTGGATGTTGTAGTCG 63471 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || | || ||| || || ||||| || ||| | ||||| ||||| || || || Sbjct 63472 CTCAAAGTACGGCCATCTTCTAACTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGT 63531 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| ||||| ||||| || || || ||||| ||| | || ||| | ||| Sbjct 63532 GGAATTCCTTCCTTATCCTGGATCTTGGATTTGACATTTTCGATAGTATCGCTTGGCTCA 63591 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | ||||| ||||| || || | |||||| || ||||||||||| Sbjct 63592 ACTTCCAAAGTAATGGTTTTTCCTGTCAAAGTTTTGACGAAAATTTGCAT 63641 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || |||||||||||||| || || ||||| | || | ||| ||||| || Sbjct 62299 TGAAGTGTAGATTCCTTTTGGATGTTGTAGTCGCTTAGCGTGCGACCATCTTCCAACTGC 62358 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | || | |||||||| || || ||||| ||||| |||||||||||||| Sbjct 62359 TTACCAGCGAAGATGAGACGTTGCTGATCTGGTGGAATACCTTCCTTATCTTGAATTTTG 62418 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 ||||| ||| | || || | |||||||| | |||| ||||| || || Sbjct 62419 GATTTGACATTTTCGATAGTATCACTTGGTTCGACTTCCAAGGTAATTGTTTTACCAGTG 62478 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 || || || || ||||| ||||| Sbjct 62479 AGTGTCTTGACGAAAATCTGCAT 62501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451995210843440