Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoplax_20adhaerens_20[refseq_20GCF_5F000150275.1_202008-06-17] 1,414 sequences; 105,631,681 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1375 161 2e-34 >seq1375 Length=284262 Score = 161 bits (178), Expect = 2e-34 Identities = 166/216 (77%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| || | ||| || ||||| |||||||| |||||||||||| | || | || || Sbjct 62973 CAATACCAAGTGGAGTGTGGATTCTTTTTGGATATTGTAATCGCTTAATGTACGGCCGTC 63032 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| | || || || ||||| |||||||| ||||| ||||||||||||||||||||||| Sbjct 63033 TTCCAATTGTTTGCCAGCGAATATAAGTCGCTGTTGATCTGGAGGAATGCCTTCTTTGTC 63092 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAAC 195104 |||||| ||| ||| ||||| |||||||| || ||| ||||||||| | || | Sbjct 63093 TTGAATCTTTGACTTCACGTTTTCAATGGTATC---ACTTGGTTCCACTTCCAAAGTGAT 63149 Query 195105 CGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || |||||||| ||||| | ||||| Sbjct 63150 GGTTTTTCCAGTTAAAGTTTTGACGAAAATCTGCAT 63185 Score = 156 bits (172), Expect = 9e-33 Identities = 165/216 (76%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 |||||| | ||||| || || ||||| || || ||||||||| ||||| | ||||| Sbjct 63201 CAAAACCAAATGAAGTGTCGATTCTTTCTGGATGTTGTAATCGCTCAGAGTGCGACCATC 63260 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| ||||| || || ||||| || | ||||| || || || ||||| ||||||||||| Sbjct 63261 TTCTAGCTGTTTGCCAGCGAAAATTAAACGTTGCTGATCGGGTGGAATACCTTCTTTGTC 63320 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAAC 195104 ||||||||| |||||||| ||||||||||| ||| ||||||||| | ||||| Sbjct 63321 TTGAATTTTGGATTTGACGTTTTCAATGGTGTC---ACTGGGTTCCACTTCTAAGGTAAT 63377 Query 195105 CGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || || || ||||| || || || | |||||| Sbjct 63378 CGTTTTGCCAGTTAAAGTCTTGACAAAAATTTGCAT 63413 Score = 134 bits (148), Expect = 3e-26 Identities = 154/206 (75%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||||||||| |||||||| || || || ||| || || | |||||||| | ||| Sbjct 62755 TGAAGAGTGGATTCTTTTTGGATGTTATAGTCGCTTAGCGTGCGGCCATCTTCCAATTGC 62814 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| ||||| ||||| ||||| || ||||| || || |||||||||||||||||||| Sbjct 62815 TTACCAGCGAAAATAAGACGTTGCTGATCTGGTGGGATACCTTCTTTGTCTTGAATTTTG 62874 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCCT 195114 ||||| || || || || || ||| ||| ||||| | ||||| || ||||| Sbjct 62875 GATTTGACATTTTCGATAGTATC---ACTTGGTTCGACTTCTAAGGTAATGGTTTTTCCC 62931 Query 195115 GTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || || || | ||||| Sbjct 62932 GTTAAAGTCTTGACAAATATCTGCAT 62957 Score = 127 bits (140), Expect = 5e-24 Identities = 162/222 (73%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||| | ||| ||||| || | ||| |||||||| || || ||||| ||| | ||| | Sbjct 63423 GAGACGCAAGACAAGATGTAAAGTCGACTCTTTCTGGATGTTGTAGTCGCTCAAAGTACG 63482 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||||||| | ||| ||||| ||||| || | |||||||| ||||| ||||| ||||| Sbjct 63483 GCCATCTTCTAACTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATTCCTTC 63542 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAG 195098 || || || || || ||||| || || || || || ||| || ||||| | Sbjct 63543 CTTATCCTGGATCTTGGATTTGACATTTTCGATAGTATCG---CTTGGCTCAACTTCCAA 63599 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| || ||||||||||||||||| ||||| | |||||| Sbjct 63600 AGTAATGGTTTTTCCTGTCAAAGTTTTGACGAAAATTTGCAT 63641 Score = 120 bits (132), Expect = 7e-22 Identities = 151/206 (73%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||| ||||| |||||||| || || || ||| || || | |||||||| | ||| Sbjct 62527 TGAAGTGTGGATTCTTTTTGGATGTTATAGTCGCTTAGTGTGCGGCCATCTTCTAATTGC 62586 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| ||||| || || ||||| || ||||| || || ||||||||||||||||||||| Sbjct 62587 TTACCAGCGAAAATCAGACGTTGCTGATCTGGTGGGATACCTTCTTTGTCTTGAATTTTT 62646 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCCT 195114 ||||| || || || || || ||| ||| ||||| | ||||| || || || Sbjct 62647 GATTTGACATTTTCGATAGTATC---ACTTGGTTCGACTTCCAAGGTAATTGTTTTACCA 62703 Query 195115 GTCAAAGTTTTTACGAACACTTGCAT 195140 || | || || ||||| | ||||| Sbjct 62704 GTGAGTGTCTTGACGAAAATCTGCAT 62729 Score = 118 bits (130), Expect = 2e-21 Identities = 151/207 (73%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| || || || ||||| || ||||| ||| || || | |||||||| | ||| Sbjct 62298 GTGAAGTGTAGATTCCTTTTGGATGTTGTAGTCGCTTAGCGTGCGACCATCTTCCAACTG 62357 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| |||||||| || ||||| || ||||| ||||| ||||| || ||||||||||| Sbjct 62358 CTTACCAGCGAAGATGAGACGTTGCTGATCTGGTGGAATACCTTCCTTATCTTGAATTTT 62417 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCC 195113 ||||| || || || || || ||| ||| ||||| | ||||| || || || Sbjct 62418 GGATTTGACATTTTCGATAGTATC---ACTTGGTTCGACTTCCAAGGTAATTGTTTTACC 62474 Query 195114 TGTCAAAGTTTTTACGAACACTTGCAT 195140 || | || || ||||| | ||||| Sbjct 62475 AGTGAGTGTCTTGACGAAAATCTGCAT 62501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109461499660538