Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoplax_20adhaerens_20[refseq_20GCF_5F000150275.1_202008-06-17] 1,414 sequences; 105,631,681 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1402 93.3 5e-14 >seq1402 Length=1917717 Score = 93.3 bits (102), Expect = 5e-14 Identities = 122/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| | || |||||||| || ||||| || | | || | || || | |||||| | | Sbjct 1405219 TCCAGGCGTAAAAATGCATGCTGGTTAACTTCGCAAAATTGGGCTCAGCAATATGTACGT 1405160 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 ||| |||||||| |||||||| | || || | ||||||||||||||| | | | Sbjct 1405159 TAAATGATTGACTTTGATCAATGTAAGCTCCCCGATCAGCTGCCATATCGATCAAGGTTC 1405100 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218 |||| | || |||||||| |||||||| | |||||| || ||||| Sbjct 1405099 TTTGAGAAATTTCCCATACGGTTTTATATAACGCTTTAATATCATCTGG 1405051 Score = 86.0 bits (94), Expect = 7e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 47357 ATATATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGA 47416 ||| ||||| |||||||| || || || ||||| ||||| |||| ||||||||||| || Sbjct 1404636 ATAAATATTGCTTGTATACGGCTCAATTGATTCGTTATTACCAAGGATTTGAGCAGTAGA 1404577 Query 47417 TGCTGTAGGCATGGATGCAACTAATAAGCTATTTCTTACTCCATA 47461 || || ||||| | || | || ||||||||||| || ||||| Sbjct 1404576 AGCCGTTGGCATTGGAGCTAATAGTAAGCTATTTCGTAAGCCATA 1404532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562098864726960