Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoplax_20adhaerens_20[refseq_20GCF_5F000150275.1_202008-06-17] 1,414 sequences; 105,631,681 total letters Query= NC_020483.1 Length=42084 Score E Sequences producing significant alignments: (Bits) Value seq646 98.7 3e-16 >seq646 Length=1920 Score = 98.7 bits (108), Expect = 3e-16 Identities = 264/396 (67%), Gaps = 12/396 (3%) Strand=Plus/Minus Query 15484 GGTACGACATCACCATCAATAGAACCATACAGAGCTAACGCTTATGTACAAAAAACAATG 15543 ||| | ||||| ||| || || |||| | | || || ||| ||| |||| || Sbjct 1542 GGTTCTACATCTCCAGGGATTGAGCCATTTAATTCAAATGCATATACACAGAAAAGTTTG 1483 Query 15544 TCAGGTTCTTTTCTAGTTAAGAA-TAAATATTTAGAAAAGTTACTAGAGAAAAAAGGCAT 15602 | ||||| || | | |||||| ||| ||||| | || ||| || | | |||| | Sbjct 1482 ACGGGTTCATT-CAATATAAGAAATAAGTATTTGAAGAAATTATTACAAATGAAAGATAA 1424 Query 15603 GAACACTGACGCAGTGTGGCAATCTAT--TGTAGCACAGAGAGGTTCTGTATTACATTTA 15660 | || || | | | ||| |||||| || | || ||| ||||||||| |||||| Sbjct 1423 AGATACAGAGGAAATTTGGTCATCTATAATGAACCAT-GAG-GGTTCTGTAAGTCATTTA 1366 Query 15661 GATGAACTATCTGATTATGAAAAAGATACATTTAAAACATCTATAGAAATTAATCAGCAA 15720 || || | | ||||||||||| ||||||||| || | ||||| ||||| ||| Sbjct 1365 GAATTTTTAAGTAAAGATGAAAAAGATGTATTTAAAACTGCTTTTGAAATAAATCAACAA 1306 Query 15721 TGGATAATAGAACATGCGGCAGACAGACAACAATTTATATGTCAAGGTCAGTCAGTAAAT 15780 ||| |||| |||||||| ||||| ||| | | |||| |||| | ||| || ||||| Sbjct 1305 TGGCTAATTGAACATGCTGCAGATAGAACTCCTTATATAAGTCAGGCTCAATCTTTAAAT 1246 Query 15781 GTATTTGTACCTGCTGATGTAAACATTAAA---GAGTTACATGACATACACATGTTAGCT 15837 | ||| | || |||||| | | |||| || ||| || | | || |||||| Sbjct 1245 ATTTTTATTCCAGCTGATATTGA---TAAATCTGAATTAAATAAATTGCATTATTTAGCT 1189 Query 15838 TGGAAAAGAAAAATTAAAACTTTGTATTATTGTAGA 15873 ||||| | | | || | || |||||||||||| Sbjct 1188 TGGAAGAAAGGCGTGAAGAGCTTATATTATTGTAGA 1153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 134544940784328