Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoplax_20adhaerens_20[refseq_20GCF_5F000150275.1_202008-06-17] 1,414 sequences; 105,631,681 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq1375 136 8e-27 >seq1375 Length=284262 Score = 136 bits (150), Expect = 8e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | |||||| | |||||||| | ||| | ||||| ||| ||||| || Sbjct 62728 ATCCCACCACGAAGACGAAGCACTAAATGAAGAGTGGATTCTTTTTGGATGTTATAGTCG 62787 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || || |||| |||||||| |||||||| || || | | || ||||| ||| Sbjct 62788 CTTAGCGTGCGGCCATCTTCCAATTGCTTACCAGCGAAAATAAGACGTTGCTGATCTGGT 62847 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| ||||| ||||| ||| ||||| |||| ||| | ||| Sbjct 62848 GGGATACCTTCTTTGTCTTGAATTTTGGATTTGACATTTTCGATAGTATCACTTGGTTCG 62907 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||| ||||||||||| || ||||| || || | |||||||||||| Sbjct 62908 ACTTCTAAGGTAATGGTTTTTCCCGTTAAAGTCTTGACAAATATCTGCAT 62957 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | |||||| ||||| || || | || | ||||| |||||| ||||| Sbjct 62956 ATACCACCACGAAGACGCAATACCAAGTGGAGTGTGGATTCTTTTTGGATATTGTAATCG 63015 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||||| || | || ||||||||||| ||||| || || | || ||||||||| || Sbjct 63016 CTTAATGTACGGCCGTCTTCCAATTGTTTGCCAGCGAATATAAGTCGCTGTTGATCTGGA 63075 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| ||||| || || || || || || | ||| | ||| Sbjct 63076 GGAATGCCTTCTTTGTCTTGAATCTTTGACTTCACGTTTTCAATGGTATCACTTGGTTCC 63135 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | ||| |||||||| |||||||| ||||| | || |||||||| Sbjct 63136 ACTTCCAAAGTGATGGTTTTTCCAGTTAAAGTTTTGACGAAAATCTGCAT 63185 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | |||||||| |||||||| | || | ||||| ||| ||||| || Sbjct 62500 ATACCACCACGAAGACGTAGCACTAAATGAAGTGTGGATTCTTTTTGGATGTTATAGTCG 62559 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || ||| || |||| || ||||| |||||||| || || | | || ||||| ||| Sbjct 62560 CTTAGTGTGCGGCCATCTTCTAATTGCTTACCAGCGAAAATCAGACGTTGCTGATCTGGT 62619 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| ||||| ||||| ||| ||||| |||| ||| | ||| Sbjct 62620 GGGATACCTTCTTTGTCTTGAATTTTTGATTTGACATTTTCGATAGTATCACTTGGTTCG 62679 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | ||||| ||||||||||| | ||| || | || |||||||| Sbjct 62680 ACTTCCAAGGTAATTGTTTTACCAGTGAGTGTCTTGACGAAAATCTGCAT 62729 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 192319 AGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGT 192378 ||||| || || | ||||||||| | |||||| ||| || || || || || || Sbjct 63424 AGACGCAAGACAAGATGTAAAGTCGACTCTTTCTGGATGTTGTAGTCGCTCAAAGTACGG 63483 Query 192379 TCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCT 192438 |||| || || ||||||||||| || || || | |||||||| ||||| |||||||| Sbjct 63484 CCATCTTCTAACTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATTCCTTCC 63543 Query 192439 TTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTA 192498 ||||| || || || ||| ||||| |||| ||| | || ||||| | |||| Sbjct 63544 TTATCCTGGATCTTGGATTTGACATTTTCGATAGTATCGCTTGGCTCAACTTCCAAAGTA 63603 Query 192499 ATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||||||| || || || ||||| | || || ||||| Sbjct 63604 ATGGTTTTTCCTGTCAAAGTTTTGACGAAAATTTGCAT 63641 Score = 113 bits (124), Expect = 9e-20 Identities = 168/237 (71%), Gaps = 1/237 (0%) Strand=Plus/Plus Query 192301 TTAATAAT-ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATT 192359 ||| |||| |||||| | |||||| | ||| || || | |||| || || ||| || Sbjct 62265 TTATTAATTACCACCACGAAGACGCAGTACCAAGTGAAGTGTAGATTCCTTTTGGATGTT 62324 Query 192360 ATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTG 192419 || || || || || |||| ||||| || |||||||| ||||| | | || || Sbjct 62325 GTAGTCGCTTAGCGTGCGACCATCTTCCAACTGCTTACCAGCGAAGATGAGACGTTGCTG 62384 Query 192420 ATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGA 192479 ||| ||||| || ||||| |||||||| ||||| ||| ||||| |||| ||| Sbjct 62385 ATCTGGTGGAATACCTTCCTTATCTTGAATTTTGGATTTGACATTTTCGATAGTATCACT 62444 Query 192480 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 | ||| ||||| | ||||| ||||||||||| | ||| || | || |||||||| Sbjct 62445 TGGTTCGACTTCCAAGGTAATTGTTTTACCAGTGAGTGTCTTGACGAAAATCTGCAT 62501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984462164298900