Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoplax_20adhaerens_20[refseq_20GCF_5F000150275.1_202008-06-17] 1,414 sequences; 105,631,681 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq1375 98.7 8e-16 >seq1375 Length=284262 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| ||||||||||| |||||||| || |||||||||||| | ||| || || Sbjct 62957 ATGCAGATATTTGTCAAGACTTTAACGGGAAAAACCATTACCTTAGAAGTCGAACCAAGT 62898 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| ||| | || ||| || ||| ||||||||||| | || ||||| Sbjct 62897 GATACTATCGAAAATGTCAAATCCAAAATTCAAGACAAAGAAGGTATCCCACCAGATCAG 62838 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | ||||||| || ||||| || |||| |||| | | || | || || ||| Sbjct 62837 CAACGTCTTATTTTCGCTGGTAAGCAATTGGAAGATGGCCGCACGCTAAGCGACTATAAC 62778 Query 110453 ATTCAAAAAGAATCTAC 110469 || ||||||||||| || Sbjct 62777 ATCCAAAAAGAATCCAC 62761 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || |||||||||||||| || |||||||| || | ||| ||| || Sbjct 63185 ATGCAGATTTTCGTCAAAACTTTAACTGGAAAAACCATCACTTTGGAAGTGGAACCAAGT 63126 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | || || |||||| |||||||||||| | || |||||| Sbjct 63125 GATACCATTGAAAACGTGAAGTCAAAGATTCAAGACAAAGAAGGCATTCCTCCAGATCAA 63066 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||||||| | || || ||||| |||| || | | | ||| | |||||||| Sbjct 63065 CAGCGACTTATATTCGCTGGCAAACAATTGGAAGACGGCCGTACATTAAGCGATTACAAT 63006 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484 || ||||||||||| || | ||| |||| || Sbjct 63005 ATCCAAAAAGAATCCACACTCCACTTGGTATT 62974 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || ||||||||||| || || ||||||||||| | ||| ||||| | Sbjct 63641 ATGCAAATTTTCGTCAAAACTTTGACAGGAAAAACCATTACTTTGGAAGTTGAGCCAAGC 63582 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| ||| | || ||| ||||| || || ||||| | || |||||| Sbjct 63581 GATACTATCGAAAATGTCAAATCCAAGATCCAGGATAAGGAAGGAATTCCACCAGATCAA 63522 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | | |||| || ||||||||| | || |||| | | || || || |||||| Sbjct 63521 CAACGTTTGATTTTCGCTGGTAAACAGTTAGAAGATGGCCGTACTTTGAGCGACTACAAC 63462 Query 110453 ATTCAAAAAGAATCTACGTTGCA 110475 || || ||||| || || || || Sbjct 63461 ATCCAGAAAGAGTCGACTTTACA 63439 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| |||||||| |||||||| |||||||| |||||| | ||| ||| || Sbjct 63413 ATGCAAATTTTTGTCAAGACTTTAACTGGCAAAACGATTACCTTAGAAGTGGAACCCAGT 63354 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | || ||| || ||| ||||||||||| | || ||||| Sbjct 63353 GACACCATTGAAAACGTCAAATCCAAAATTCAAGACAAAGAAGGTATTCCACCCGATCAG 63294 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | | |||| || || |||||||| || |||| | || || ||||||||| Sbjct 63293 CAACGTTTAATTTTCGCTGGCAAACAGCTAGAAGATGGTCGCACTCTGAGCGATTACAAC 63234 Query 110453 ATTCAAAAAGAATCTAC 110469 || || |||||||| || Sbjct 63233 ATCCAGAAAGAATCGAC 63217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412834485449102