Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoplax_20adhaerens_20[refseq_20GCF_5F000150275.1_202008-06-17] 1,414 sequences; 105,631,681 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq1375 158 9e-34 >seq1375 Length=284262 Score = 158 bits (174), Expect = 9e-34 Identities = 168/219 (77%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 29569 AAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGA 29628 || |||| ||||||||||| || |||||||| || ||||| ||||| | |||||| Sbjct 63196 AAGCGCAAAACCAAATGAAGTGTCGATTCTTTCTGGATGTTGTAATCGCTCAGAGTGCGA 63255 Query 29629 GAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCT 29688 ||| || || ||||||||||| | || || | ||||||||| || |||||||| ||| Sbjct 63256 CCATCTTCTAGCTGTTTGCCAGCGAAAATTAAACGTTGCTGATCGGGTGGAATACCTTCT 63315 Query 29689 TTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGT 29747 |||||||| |||||| | |||||| |||| | |||||| |||| ||||| | || Sbjct 63316 TTGTCTTG-AATTTTGGATTTGACGTTTTCAATGGTGTCACTGGGTTCCACTTCTAAGGT 63374 Query 29748 TATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || |||||||||||||| || || ||||| || ||||| Sbjct 63375 AATCGTTTTGCCAGTTAAAGTCTTGACAAAAATTTGCAT 63413 Score = 150 bits (166), Expect = 1e-31 Identities = 165/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| ||||| |||||||| |||||||||||||| |||||||| || | ||||| Sbjct 62742 ACGAAGCACTAAATGAAGAGTGGATTCTTTTTGGATGTTATAGTCGCTTAGCGTGCGGCC 62801 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | ||| || ||||| | || | | ||||||||| || || ||||| ||||| Sbjct 62802 ATCTTCCAATTGCTTACCAGCGAAAATAAGACGTTGCTGATCTGGTGGGATACCTTCTTT 62861 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 |||||| |||||| | ||||||| |||| | ||| ||| |||| ||||| | || | Sbjct 62862 GTCTTG-AATTTTGGATTTGACATTTTCGATAGTATCACTTGGTTCGACTTCTAAGGTAA 62920 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | ||||| || ||||| || || |||||||||||||| Sbjct 62921 TGGTTTTTCCCGTTAAAGTCTTGACAAATATCTGCAT 62957 Score = 145 bits (160), Expect = 6e-30 Identities = 164/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| ||||| |||||||| |||||||||||||| |||||||| || | ||||| Sbjct 62514 ACGTAGCACTAAATGAAGTGTGGATTCTTTTTGGATGTTATAGTCGCTTAGTGTGCGGCC 62573 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | ||| || ||||| | |||| | ||||||||| || || ||||| ||||| Sbjct 62574 ATCTTCTAATTGCTTACCAGCGAAAATCAGACGTTGCTGATCTGGTGGGATACCTTCTTT 62633 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 |||||| |||||||| ||||||| |||| | ||| ||| |||| ||||| | || | Sbjct 62634 GTCTTG-AATTTTTGATTTGACATTTTCGATAGTATCACTTGGTTCGACTTCCAAGGTAA 62692 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | ||||| ||||| | || || || || |||||||| Sbjct 62693 TTGTTTTACCAGTGAGTGTCTTGACGAAAATCTGCAT 62729 Score = 127 bits (140), Expect = 2e-24 Identities = 162/218 (74%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGCAATGGTGCGAG 29629 ||||| ||||| || || |||||||||||||| || || ||||| | |||| | || Sbjct 62970 ACGCAATACCAAGTGGAGTGTGGATTCTTTTTGGATATTGTAATCGCTTAATG-TACGGC 63028 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 || || | |||||||||||| |||| | || || ||||| || ||||| || |||| Sbjct 63029 CGTCTTCCAATTGTTTGCCAGCGAATATAAGTCGCTGTTGATCTGGAGGAATGCCTTCTT 63088 Query 29690 TGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTT 29748 ||||||| ||| |||| || || |||| | || ||| |||| ||||| | ||| Sbjct 63089 TGTCTTG-AATCTTTGACTTCACGTTTTCAATGGTATCACTTGGTTCCACTTCCAAAGTG 63147 Query 29749 ATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| |||||||| ||||| || || |||||||| Sbjct 63148 ATGGTTTTTCCAGTTAAAGTTTTGACGAAAATCTGCAT 63185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385212561469374