Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoplax_20adhaerens_20[refseq_20GCF_5F000150275.1_202008-06-17] 1,414 sequences; 105,631,681 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq1375 170 4e-37 seq1385 93.3 8e-14 >seq1375 Length=284262 Score = 170 bits (188), Expect = 4e-37 Identities = 175/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||||| || ||||| || || |||||||| || ||||| ||||| Sbjct 62957 TACCACCACGAAGACGCAATACCAAGTGGAGTGTGGATTCTTTTTGGATATTGTAATCGC 63016 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | |||||||| | |||||| ||||| || || |||| ||||||||||||| Sbjct 63017 TTAATGTACGGCCGTCTTCCAATTGTTTGCCAGCGAATATAAGTCGCTGTTGATCTGGAG 63076 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| || ||||||||||||| || || |||||||| |||||| | ||||| | Sbjct 63077 GAATGCCTTCTTTGTCTTGAATCTTTGACTTCACGTTTTCAATGGTATCACTTGGTTCCA 63136 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||||| || || || || || || || || || || |||||||| Sbjct 63137 CTTCCAAAGTGATGGTTTTTCCAGTTAAAGTTTTGACGAAAATCTGCAT 63185 Score = 161 bits (178), Expect = 2e-34 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || |||| ||| || || || || ||||||||||| || || ||||| Sbjct 63185 TACCACCACGTAAGCGCAAAACCAAATGAAGTGTCGATTCTTTCTGGATGTTGTAATCGC 63244 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| | | ||| |||||||| ||||| ||||| || |||| | ||| ||||| || | Sbjct 63245 TCAGAGTGCGACCATCTTCTAGCTGTTTGCCAGCGAAAATTAAACGTTGCTGATCGGGTG 63304 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| || |||||||| || | ||| || |||||||| || ||| | ||||| | Sbjct 63305 GAATACCTTCTTTGTCTTGAATTTTGGATTTGACGTTTTCAATGGTGTCACTGGGTTCCA 63364 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || ||||| ||||| || || ||||| ||||| || ||||| Sbjct 63365 CTTCTAAGGTAATCGTTTTGCCAGTTAAAGTCTTGACAAAAATTTGCAT 63413 Score = 158 bits (174), Expect = 2e-33 Identities = 177/237 (75%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 82574 TTATCACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATT 82633 |||| | |||| || | | |||||| || ||||| || |||||||| || || || || Sbjct 62265 TTATTAATTACCACCACGAAGACGCAGTACCAAGTGAAGTGTAGATTCCTTTTGGATGTT 62324 Query 82634 ATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTG 82693 || || ||| | | ||| ||||| | || || ||||| ||||| || | ||| || Sbjct 62325 GTAGTCGCTTAGCGTGCGACCATCTTCCAACTGCTTACCAGCGAAGATGAGACGTTGCTG 62384 Query 82694 ATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATT 82753 |||||| || || ||||||||||||||||| || | ||| |||||||| || |||||| | Sbjct 62385 ATCTGGTGGAATACCTTCCTTATCTTGAATTTTGGATTTGACATTTTCGATAGTATCACT 62444 Query 82754 AGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| |||||||| || || || || || || | ||||| || || |||||||| Sbjct 62445 TGGTTCGACTTCCAAGGTAATTGTTTTACCAGTGAGTGTCTTGACGAAAATCTGCAT 62501 Score = 156 bits (172), Expect = 8e-33 Identities = 164/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || ||||| || ||||| |||||||| || || ||||| || ||| | | || Sbjct 62742 ACGAAGCACTAAATGAAGAGTGGATTCTTTTTGGATGTTATAGTCGCTTAGCGTGCGGCC 62801 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| | ||| || ||||| || || || | ||| |||||||| || || ||||| || Sbjct 62802 ATCTTCCAATTGCTTACCAGCGAAAATAAGACGTTGCTGATCTGGTGGGATACCTTCTTT 62861 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 |||||||| || | ||| |||||||| || |||||| | ||||| ||||| || || || Sbjct 62862 GTCTTGAATTTTGGATTTGACATTTTCGATAGTATCACTTGGTTCGACTTCTAAGGTAAT 62921 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || || || ||||| |||||||||||||| Sbjct 62922 GGTTTTTCCCGTTAAAGTCTTGACAAATATCTGCAT 62957 Score = 138 bits (152), Expect = 2e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||||| || | || | ||| || |||||||| || || || || | | | | || Sbjct 63426 ACGCAAGACAAGATGTAAAGTCGACTCTTTCTGGATGTTGTAGTCGCTCAAAGTACGGCC 63485 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||||| ||||| ||||| || || | | |||||||||||| || ||||||||||| Sbjct 63486 ATCTTCTAACTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATTCCTTCCTT 63545 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||| || ||||| | ||| |||||||| || ||||| | || || ||||||||||| || Sbjct 63546 ATCCTGGATCTTGGATTTGACATTTTCGATAGTATCGCTTGGCTCAACTTCCAAAGTAAT 63605 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTAT 82813 || || |||||||| || || || || || ||||| || Sbjct 63606 GGTTTTTCCTGTCAAAGTTTTGACGAAAATTTGCATGAT 63644 >seq1385 Length=536744 Score = 93.3 bits (102), Expect = 8e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 82707 CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCC 82766 ||||| ||||| ||||| || | ||||||||||||||| ||||| ||||||| || || Sbjct 292212 CCTTCTTTATCCTGAATTTTGGATTTTACATTTTCAATGGTATCGCTAGGTTCGACCTCT 292153 Query 82767 AAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || || ||||| || || || ||||| ||||| |||||||| Sbjct 292152 AGCGTGATGGTCTTTCCAGTTAAAGTCTTAACAAAAATCTGCAT 292109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981809412359346