Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoplax_20adhaerens_20[refseq_20GCF_5F000150275.1_202008-06-17] 1,414 sequences; 105,631,681 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq1414 113 1e-19 seq1403 91.5 3e-13 seq1402 91.5 3e-13 seq1411 84.2 5e-11 >seq1414 Length=13260704 Score = 113 bits (124), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 4/210 (2%) Strand=Plus/Plus Query 304932 TTATGCAGGCATCTCAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAG 304991 |||| ||||| |||| |||||| ||||| || || |||| |||| | | |||| Sbjct 8074041 TTATTTAGGCAATGCAAAAATCTGGGAGACCGTTGAAATCAATTAAGCAAAGGTTAAAAG 8074100 Query 304992 GTAAAGAGGGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAA 305051 ||||||||||||||||||| |||||| | |||||||||||||| |||||| ||| | | Sbjct 8074101 GTAAAGAGGGTCGTATTCGTGGTAATTTGATGGGAAAACGTGTAGATTTTTCTGCCCGTA 8074160 Query 305052 GTGTAATCACACCTGATTCTCAAATTAGTCTTCATGAATTAGGAGTTCCAATTGA--AAT 305109 ||| ||||| || ||||| | || || || || | || ||||| | || || Sbjct 8074161 CTGTCATCACGCCGGATTCAAATCTTGAGATTGATCAAGTTGGGGTTCC--TCGATCTAT 8074218 Query 305110 TGCTTTAAAACTAACATTTCCAGAGAAAGT 305139 |||| || ||| ||| ||| |||| ||| Sbjct 8074219 TGCTCAAACACTCTCATATCCTGAGATAGT 8074248 >seq1403 Length=1942820 Score = 91.5 bits (100), Expect = 3e-13 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 167239 TCATTACACCACCAGCATTATCGAATTCATTCGCATAATTTGGTGCTGAAAATACAGTAA 167298 |||| | | |||||||||||||||||||| |||||| ||||| ||||||| |||| Sbjct 1001851 TCATCATAGCACCAGCATTATCGAATTCACCACAATAATTAGGTGCAGAAAATAGTGTAA 1001910 Query 167299 CTAATTTACGATTGAAAAATAATTCATAACCATCTTCAACAAC 167341 | |||| ||| || ||| |||||||| |||||||| ||||| Sbjct 1001911 CCAATTGACGCTTAGCAAAAAATTCATAGCCATCTTCCACAAC 1001953 >seq1402 Length=1917717 Score = 91.5 bits (100), Expect = 3e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 110838 AGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAA 110897 || || || ||||| ||||||||||||||||| | ||||| || |||||||| ||| || Sbjct 1402967 AGGGCGCGAGATTTGTTTTATGCAATGTGGATGCCGGATTTGTTTATGAAACGAGTTGAA 1403026 Query 110898 GAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATAT 110957 ||||| || | ||||| | ||||| || || || ||| ||| || |||| ||| Sbjct 1403027 GAAAACGGAGTATGGTCGTTAATGTGCCCGAATGATTGTCCAGGTTTACATGATACTTAT 1403086 Query 110958 GGAAAAGAGTTTGAA 110972 || |||| |||||| Sbjct 1403087 GGCGAAGAATTTGAA 1403101 >seq1411 Length=8164392 Score = 84.2 bits (92), Expect = 5e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 305405 ACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAA 305464 ||||||||||| || | | | | ||||| || | |||||||||||||||||| ||||| Sbjct 5965005 ACATTTCGATTCAACGAATGCGTCTGTACACCATTTAATGCGGATTTTGATGGCGATGAG 5964946 Query 305465 ATGAATATGCATGTACCTCAATCA 305488 |||||||| ||| |||||||| || Sbjct 5964945 ATGAATATCCATTTACCTCAAACA 5964922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186791298660854