Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoplax_20adhaerens_20[refseq_20GCF_5F000150275.1_202008-06-17] 1,414 sequences; 105,631,681 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq1375 127 1e-24 >seq1375 Length=284262 Score = 127 bits (140), Expect = 1e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||||| ||| ||||| || ||| |||||||| ||||| || ||| Sbjct 62502 ACCACCACGAAGACGTAGCACTAAATGAAGTGTGGATTCTTTTTGGATGTTATAGTCGCT 62561 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 |||||||| | || || ||||| || || || ||||||| ||| ||||||||| | || Sbjct 62562 TAGTGTGCGGCCATCTTCTAATTGCTTACCAGCGAAAATCAGACGTTGCTGATCTGGTGG 62621 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||||||| |||||| || || |||| || | || || |||| ||| | Sbjct 62622 GATACCTTCTTTGTCTTGAATTTT-TGATTTGACATTTTCGATAGTATCACTTGGTTCGA 62680 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | || || |||||||| || | || || || || |||||||| Sbjct 62681 CTTCCAAGGTAATTGTTTTACCAGTGAGTGTCTTGACGAAAATCTGCAT 62729 Score = 127 bits (140), Expect = 1e-24 Identities = 175/241 (73%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || ||||| | | ||| | ||| ||||| |||||| |||||||| ||| Sbjct 62719 AAAATCTGCATCCCACCACGAAGACGAAGCACTAAATGAAGAGTGGATTCTTTTTGGATG 62778 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 || || ||| || ||||| | || |||||||| || || || ||||| | ||| ||| Sbjct 62779 TTATAGTCGCTTAGCGTGCGGCCATCTTCCAATTGCTTACCAGCGAAAATAAGACGTTGC 62838 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689 |||||| | || | |||||||||||| |||||| | || |||| || | || || Sbjct 62839 TGATCTGGTGGGATACCTTCTTTGTCTTGAATTTT-GGATTTGACATTTTCGATAGTATC 62897 Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||| || || | || || ||||| || ||||| || || ||||| |||||||| Sbjct 62898 ACTTGGTTCGACTTCTAAGGTAATGGTTTTTCCCGTTAAAGTCTTGACAAATATCTGCAT 62957 Query 33750 A 33750 | Sbjct 62958 A 62958 Score = 123 bits (136), Expect = 2e-23 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| || ||||| || || ||| |||||||| || ||||||||| Sbjct 62958 ACCACCACGAAGACGCAATACCAAGTGGAGTGTGGATTCTTTTTGGATATTGTAATCGCT 63017 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||| || |||| ||||||||||| || || || || | ||||| |||||| | || Sbjct 63018 TAATGTACGGCCGTCTTCCAATTGTTTGCCAGCGAATATAAGTCGCTGTTGATCTGGAGG 63077 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||||| ||| || || | || | || | ||| || |||| ||||| Sbjct 63078 AATGCCTTCTTTGTCTTGAATCTT-TGACTTCACGTTTTCAATGGTATCACTTGGTTCCA 63136 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| ||||| || ||||| ||||| || || ||||||||| Sbjct 63137 CTTCCAAAGTGATGGTTTTTCCAGTTAAAGTTTTGACGAAAATCTGCATA 63186 Score = 122 bits (134), Expect = 6e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || || || |||||||| || || ||||| || |||||||||||| Sbjct 63186 ACCACCACGTAAGCGCAAAACCAAATGAAGTGTCGATTCTTTCTGGATGTTGTAATCGCT 63245 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || || | ||||| || || ||||| ||||| |||||||| | || Sbjct 63246 CAGAGTGCGACCATCTTCTAGCTGTTTGCCAGCGAAAATTAAACGTTGCTGATCGGGTGG 63305 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||||||| |||||| | || || | || | |||||| || | ||||| Sbjct 63306 AATACCTTCTTTGTCTTGAATTTT-GGATTTGACGTTTTCAATGGTGTCACTGGGTTCCA 63364 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | || |||||||| || ||||| || || ||||| || ||||| Sbjct 63365 CTTCTAAGGTAATCGTTTTGCCAGTTAAAGTCTTGACAAAAATTTGCAT 63413 Score = 82.4 bits (90), Expect = 5e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| || || | ||||| ||| |||||| || |||||||| ||| | || || | Sbjct 63426 ACGCAAGACAAGATGTAAAGTCGACTCTTTCTGGATGTTGTAGTCGCTCAAAGTACGGCC 63485 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 || || || ||||| || || ||||||||||| || |||||| | || | ||||| || Sbjct 63486 ATCTTCTAACTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATTCCTTCCTT 63545 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 || || || | || |||| || | || ||||||| || || || | || | Sbjct 63546 ATCCTGGATCTT-GGATTTGACATTTTCGATAGTATCGCTTGGCTCAACTTCCAAAGTAA 63604 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | ||||| ||||| || ||||| || || || ||||| Sbjct 63605 TGGTTTTTCCTGTCAAAGTTTTGACGAAAATTTGCAT 63641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328698335402880