Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoplax_20adhaerens_20[refseq_20GCF_5F000150275.1_202008-06-17] 1,414 sequences; 105,631,681 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq1375 118 3e-21 >seq1375 Length=284262 Score = 118 bits (130), Expect = 3e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || |||||| | || |||||||| |||||||||||||||||| ||| Sbjct 63182 CAGATTTTCGTCAAAACTTTAACTGGAAAAACCATCACTTTGGAAGTGGAACCAAGTGAT 63123 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| || ||| |||||||||||| |||||||| ||| || || || Sbjct 63122 ACCATTGAAAACGTGAAGTCAAAGATTCAAGACAAAGAAGGCATTCCTCCAGATCAACAG 63063 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||||||| ||||| || || || |||||||| || | || || ||||||||| || Sbjct 63062 CGACTTATATTCGCTGGCAAACAATTGGAAGACGGCCGTACATTAAGCGATTACAATATC 63003 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || ||||| || || || ||| | || ||| | ||||| Sbjct 63002 CAAAAAGAATCCACACTCCACTTGGTATTGCGTCTTCG 62965 Score = 105 bits (116), Expect = 2e-17 Identities = 150/210 (71%), Gaps = 6/210 (3%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGA---AAGTTCTGACACAGTCGA 206240 |||||| | ||||||||||| || ||||||||||| || ||| || || |||| Sbjct 63627 CAAAACTTTGACAGGAAAAACCATTACTTTGGAAGTTGAGCCAAGC---GATACTATCGA 63571 Query 206241 ATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTAT 206300 | || || ||||| || || || ||||||||| || || ||| | | || Sbjct 63570 AAATGTCAAATCCAAGATCCAGGATAAGGAAGGAATTCCACCAGATCAACAACGTTTGAT 63511 Query 206301 CTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGA 206360 ||||| || || ||||| |||||||| | |||||| ||| |||||| |||||||||| Sbjct 63510 TTTCGCTGGTAAACAGTTAGAAGATGGCCGTACTTTGAGCGACTACAACATCCAGAAAGA 63451 Query 206361 GTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||| ||| | || ||||| ||| | || || Sbjct 63450 GTCGACTTTACATCTTGTCTTGCGTCTCCG 63421 Score = 104 bits (114), Expect = 6e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || ||||| || || |||||||| ||| ||| Sbjct 62498 CAGATTTTCGTCAAGACACTCACTGGTAAAACAATTACCTTGGAAGTCGAACCAAGTGAT 62439 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || ||||| || ||| | ||| |||||||| || ||||| ||| || || || Sbjct 62438 ACTATCGAAAATGTCAAATCCAAA-ATTCAAGATAAGGAAGGTATTCCACCAGATCAGCA 62380 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | || |||||||| || ||||||||||||||||| | || | ||| |||||| | Sbjct 62379 ACGTCTCATCTTCGCTGGTAAGCAGTTGGAAGATGGTCGCACGCTAAGCGACTACAACAT 62320 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||| || || ||||| |||||| | || || | ||||| Sbjct 62319 CCAAAAGGAATCTACACTTCACTTGGTACTGCGTCTTCG 62281 Score = 95.1 bits (104), Expect = 3e-14 Identities = 143/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||||||| ||| || | || |||||||| || || || ||||| ||| ||| Sbjct 62954 CAGATATTTGTCAAGACTTTAACGGGAAAAACCATTACCTTAGAAGTCGAACCAAGTGAT 62895 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || ||||| || ||| | ||| |||||||| |||||||| || || || || Sbjct 62894 ACTATCGAAAATGTCAAATCCAAA-ATTCAAGACAAAGAAGGTATCCCACCAGATCAGCA 62836 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | ||||| ||||| || ||||| ||||||||||| | || | ||| || ||| | Sbjct 62835 ACGTCTTATTTTCGCTGGTAAGCAATTGGAAGATGGCCGCACGCTAAGCGACTATAACAT 62776 Query 206352 CCAGAAAGAGTCTACTCTTCA 206372 ||| ||||| || |||||||| Sbjct 62775 CCAAAAAGAATCCACTCTTCA 62755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181799389100294