Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoplax_20adhaerens_20[refseq_20GCF_5F000150275.1_202008-06-17] 1,414 sequences; 105,631,681 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq1375 132 4e-26 >seq1375 Length=284262 Score = 132 bits (146), Expect = 4e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | ||||| || || ||||| || ||| |||| || | ||||| ||| ||| Sbjct 63414 CATGCAAATTTTTGTCAAGACTTTAACTGGCAAAACGATTACCTTAGAAGTGGAACCCAG 63355 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || || || | || ||| |||||| || ||||| ||||| || |||||||| Sbjct 63354 TGACACCATTGAAAACGTCAAATCCAAAATTCAAGACAAAGAAGGTATTCCACCCGATCA 63295 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 |||| | | |||| || |||||||| || ||||||| | | | | | ||||||||||| Sbjct 63294 GCAACGTTTAATTTTCGCTGGCAAACAGCTAGAAGATGGTCGCACTCTGAGCGATTACAA 63235 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 || || |||||||| || ||||||| || || Sbjct 63234 CATCCAGAAAGAATCGACACTTCATTTGGTTTT 63202 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || || ||||| |||||| | || || | ||||||||| | | Sbjct 62957 ATGCAGATATTTGTCAAGACTTTAACGGGAAAAACCATTACCTTAGAAGTCGAACCAAGT 62898 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||||||||| | || ||| |||||| || ||||| ||||| || || |||||| Sbjct 62897 GATACTATCGAAAATGTCAAATCCAAAATTCAAGACAAAGAAGGTATCCCACCAGATCAG 62838 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | || |||| || || || ||| | ||||||| | | | ||||| || || Sbjct 62837 CAACGTCTTATTTTCGCTGGTAAGCAATTGGAAGATGGCCGCACGCTAAGCGACTATAAC 62778 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTG 25384 || |||||||||||||| ||||||||||| Sbjct 62777 ATCCAAAAAGAATCCACTCTTCATTTAGTG 62748 Score = 118 bits (130), Expect = 9e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || || ||| | || || ||| | || || | ||||||||| | | Sbjct 62729 ATGCAGATTTTCGTCAAGACACTCACTGGTAAAACAATTACCTTGGAAGTCGAACCAAGT 62670 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||||||||| | || ||| ||||||| || ||||| ||||| || || |||||| Sbjct 62669 GATACTATCGAAAATGTCAAATCAAAAATTCAAGACAAAGAAGGTATCCCACCAGATCAG 62610 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | || |||| || || || ||| | ||||||| | | | ||||| || || Sbjct 62609 CAACGTCTGATTTTCGCTGGTAAGCAATTAGAAGATGGCCGCACACTAAGCGACTATAAC 62550 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTA 25387 || |||||||||||||| ||||||||||| || Sbjct 62549 ATCCAAAAAGAATCCACACTTCATTTAGTGCTA 62517 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || ||||| ||||| |||||| | ||||| | ||||| ||| | | Sbjct 63185 ATGCAGATTTTCGTCAAAACTTTAACTGGAAAAACCATCACTTTGGAAGTGGAACCAAGT 63126 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | || || ||| ||| || ||||| || || || || ||||| Sbjct 63125 GATACCATTGAAAACGTGAAGTCAAAGATTCAAGACAAAGAAGGCATTCCTCCAGATCAA 63066 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || |||| || | || ||||||||| | ||||| | | | | |||||||||||| Sbjct 63065 CAGCGACTTATATTCGCTGGCAAACAATTGGAAGACGGCCGTACATTAAGCGATTACAAT 63006 Query 25355 ATTCAAAAAGAATCCAC 25371 || |||||||||||||| Sbjct 63005 ATCCAAAAAGAATCCAC 62989 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || || ||| | || || ||| | || || | ||||||||| | | Sbjct 62501 ATGCAGATTTTCGTCAAGACACTCACTGGTAAAACAATTACCTTGGAAGTCGAACCAAGT 62442 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||||||||| | || ||| |||||| ||||| || ||||| || || |||||| Sbjct 62441 GATACTATCGAAAATGTCAAATCCAAAATTCAAGATAAGGAAGGTATTCCACCAGATCAG 62382 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | ||||| | || || || || | ||||||| | | | | ||||| ||||| Sbjct 62381 CAACGTCTCATCTTCGCTGGTAAGCAGTTGGAAGATGGTCGCACGCTAAGCGACTACAAC 62322 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGT 25383 || ||||| ||||| || |||| || || Sbjct 62321 ATCCAAAAGGAATCTACACTTCACTTGGT 62293 Score = 87.8 bits (96), Expect = 2e-12 Identities = 142/202 (70%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 || ||||||| | || || ||||| || || |||||| | || || | ||||| || || Sbjct 63645 CATCATGCAAATTTTCGTCAAAACTTTGACAGGAAAAACCATTACTTTGGAAGTTGA-GC 63587 Query 25231 CAA-CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCG 25289 ||| |||||||||||| | || ||| || || ||||| || || || || || | Sbjct 63586 CAAGCGATACTATCGAAAATGTCAAATCCAAGATCCAGGATAAGGAAGGAATTCCACCAG 63527 Query 25290 ATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATT 25349 |||| ||| | | |||| || || ||||| | ||||||| | | | | ||||| | Sbjct 63526 ATCAACAACGTTTGATTTTCGCTGGTAAACAGTTAGAAGATGGCCGTACTTTGAGCGACT 63467 Query 25350 ACAATATTCAAAAAGAATCCAC 25371 |||| || || ||||| || || Sbjct 63466 ACAACATCCAGAAAGAGTCGAC 63445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445086532956480