Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoplax_20adhaerens_20[refseq_20GCF_5F000150275.1_202008-06-17] 1,414 sequences; 105,631,681 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq1375 131 1e-25 >seq1375 Length=284262 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||||||||| || || || |||||||| || |||||| | ||| |||||| | Sbjct 63413 ATGCAAATTTTTGTCAAGACTTTAACTGGCAAAACGATTACCTTAGAAGTGGAACCCAGT 63354 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | ||| | || ||| |||||| ||||||||||| | || ||||| Sbjct 63353 GACACCATTGAAAACGTCAAATCCAAAATTCAAGACAAAGAAGGTATTCCACCCGATCAG 63294 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | | |||| || |||||||| |||||||| | ||| || ||||||||||| Sbjct 63293 CAACGTTTAATTTTCGCTGGCAAACAGCTAGAAGATGGTCGCACTCTGAGCGATTACAAC 63234 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || || |||||||| ||||| ||||| || ||| | ||||| || || Sbjct 63233 ATCCAGAAAGAATCGACACTTCATTTGGTTTTGCGCTTACGTGGTGG 63187 Score = 109 bits (120), Expect = 4e-19 Identities = 152/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| ||||| || || ||| | ||||| || || |||||| ||||| ||||| | Sbjct 62729 ATGCAGATTTTCGTCAAGACACTCACTGGTAAAACAATTACCTTGGAAGTCGAACCAAGT 62670 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| || | | | || ||| ||||||| ||||||||||| | || ||||| Sbjct 62669 GATACTATCGAAAATGTCAAATCAAAAATTCAAGACAAAGAAGGTATCCCACCAGATCAG 62610 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGAT--TCTAAAACTATGGGCGATTACA 106437 ||| | || |||| || || || |||||||||||| | | |||| |||| || | Sbjct 62609 CAACGTCTGATTTTCGCTGGTAAGCAATTAGAAGATGGCCGCACACTA--AGCGACTATA 62552 Query 106438 ACATACAAAAAGAATCTACACTACATTTAGT 106468 |||| ||||||||||| ||||| |||||||| Sbjct 62551 ACATCCAAAAAGAATCCACACTTCATTTAGT 62521 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| ||||| || ||||| || ||||| || ||||| || ||||| ||||| | Sbjct 63185 ATGCAGATTTTCGTCAAAACTTTAACTGGAAAAACCATCACTTTGGAAGTGGAACCAAGT 63126 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | ||||| ||| ||| |||||||||||| | || |||||| Sbjct 63125 GATACCATTGAAAACGTGAAGTCAAAGATTCAAGACAAAGAAGGCATTCCTCCAGATCAA 63066 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || | ||||| | || ||||||||||| ||||| || | |||||||||| Sbjct 63065 CAGCGACTTATATTCGCTGGCAAACAATTGGAAGACGGCCGTACATTAAGCGATTACAAT 63006 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTG 106472 || ||||||||||| ||||| || || |||||| Sbjct 63005 ATCCAAAAAGAATCCACACTCCACTTGGTATTG 62973 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || ||||| || || || || || || ||||||||| | ||| ||||| | Sbjct 62957 ATGCAGATATTTGTCAAGACTTTAACGGGAAAAACCATTACCTTAGAAGTCGAACCAAGT 62898 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| || | | | || ||| |||||| ||||||||||| | || ||||| Sbjct 62897 GATACTATCGAAAATGTCAAATCCAAAATTCAAGACAAAGAAGGTATCCCACCAGATCAG 62838 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | ||||||| || || || ||||| |||||| || | |||| || ||| Sbjct 62837 CAACGTCTTATTTTCGCTGGTAAGCAATTGGAAGATGGCCGCACGCTAAGCGACTATAAC 62778 Query 106440 ATACAAAAAGAATCTACACTACATTTAGT 106468 || ||||||||||| || || |||||||| Sbjct 62777 ATCCAAAAAGAATCCACTCTTCATTTAGT 62749 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||||||||| || ||||| ||||| || || |||||||| ||||| || || || Sbjct 63641 ATGCAAATTTTCGTCAAAACTTTGACAGGAAAAACCATTACTTTGGAAGTTGAGCCAAGC 63582 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| || | | | || ||| || || || || ||||| | || |||||| Sbjct 63581 GATACTATCGAAAATGTCAAATCCAAGATCCAGGATAAGGAAGGAATTCCACCAGATCAA 63522 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | | |||| || || ||||| ||||||||| ||| || |||| |||||| Sbjct 63521 CAACGTTTGATTTTCGCTGGTAAACAGTTAGAAGATGGCCGTACTTTGAGCGACTACAAC 63462 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTG 106472 || || ||||| || || ||||| | || ||| Sbjct 63461 ATCCAGAAAGAGTCGACTTTACATCTTGTCTTG 63429 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| ||||| || || ||| | ||||| || || |||||| ||||| ||||| | Sbjct 62501 ATGCAGATTTTCGTCAAGACACTCACTGGTAAAACAATTACCTTGGAAGTCGAACCAAGT 62442 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| || | | | || ||| |||||| || || ||||| | || ||||| Sbjct 62441 GATACTATCGAAAATGTCAAATCCAAAATTCAAGATAAGGAAGGTATTCCACCAGATCAG 62382 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | || || | || || || || || |||||| | || | |||| |||||| Sbjct 62381 CAACGTCTCATCTTCGCTGGTAAGCAGTTGGAAGATGGTCGCACGCTAAGCGACTACAAC 62322 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTG 106472 || ||||| ||||||||||| || || ||| || Sbjct 62321 ATCCAAAAGGAATCTACACTTCACTTGGTACTG 62289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402322666603712