Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoplax_20adhaerens_20[refseq_20GCF_5F000150275.1_202008-06-17] 1,414 sequences; 105,631,681 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq1375 149 6e-31 seq1402 89.7 5e-13 >seq1375 Length=284262 Score = 149 bits (164), Expect = 6e-31 Identities = 164/216 (76%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 134499 CGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAG 134558 ||||| || | || || || ||||| || || |||||||| |||| | ||| || Sbjct 63199 CGCAAAACCAAATGAAGTGTCGATTCTTTCTGGATGTTGTAATCGCTCAGAGTGCGACCA 63258 Query 134559 TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTT 134618 || || ||||||||||| || ||||| ||||| ||||||||||| || || |||||||| Sbjct 63259 TCTTCTAGCTGTTTGCCAGCGAAAATTAAACGTTGCTGATCGGGTGGAATACCTTCTTTG 63318 Query 134619 TCTTGAATTTTTTGTTTGACCGCGTCCAAT-GTGTCGGACGATTCCACGTCGAGAGTAAT 134677 ||||||||||| ||||| || | |||| ||||| | |||||| || | ||||| Sbjct 63319 TCTTGAATTTTGGATTTGA-CGTTTTCAATGGTGTCACTGGGTTCCACTTCTAAGGTAAT 63377 Query 134678 GGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || |||||||| || || ||||||||||| Sbjct 63378 CGTTTTGCCAGTTAAAGTCTTGACAAAAATTTGCAT 63413 Score = 127 bits (140), Expect = 2e-24 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || ||||| || | ||| || |||||||| ||||| || ||||| |||| | || | Sbjct 62968 AGACGCAATACCAAGTGGAGTGTGGATTCTTTTTGGATATTGTAATCGCTTAATGTACGG 63027 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || | |||||||| || || || | ||||| ||||| || || ||||||||| Sbjct 63028 CCGTCTTCCAATTGTTTGCCAGCGAATATAAGTCGCTGTTGATCTGGAGGAATGCCTTCT 63087 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAAT-GTGTCGGACGATTCCACGTCGAGAGT 134674 || |||||||| ||| || | || | |||| || || | |||||| || | ||| Sbjct 63088 TTGTCTTGAATCTTTGACTTCA-CGTTTTCAATGGTATCACTTGGTTCCACTTCCAAAGT 63146 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||||| || ||||||||||| |||||||| ||||| Sbjct 63147 GATGGTTTTTCCAGTTAAAGTTTTGACGAAAATCTGCAT 63185 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| ||||| || || |||| || || || || || ||||||||||||| Sbjct 63415 CCGCCACGGAGACGCAAGACAAGATGTAAAGTCGACTCTTTCTGGATGTTGTAGTCGCTC 63474 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | || || | |||||| || || ||||||||||| || ||||| || || Sbjct 63475 AAAGTACGGCCATCTTCTAACTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGTGGA 63534 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || || || || || |||||| || | || ||| | || || Sbjct 63535 ATTCCTTCCTTATCCTGGATCTTGGATTTGACATTTTCGATAGTATCGCTTGGCTCAACT 63594 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | |||||||||||| || || |||||||| |||||||||||||| Sbjct 63595 TCCAAAGTAATGGTTTTTCCTGTCAAAGTTTTGACGAAAATTTGCAT 63641 Score = 109 bits (120), Expect = 6e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| || | ||| || || ||||||||||| ||||||||||||| | ||| || Sbjct 62284 AGACGCAGTACCAAGTGAAGTGTAGATTCCTTTTGGATGTTGTAGTCGCTTAGCGTGCGA 62343 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || | ||| || || || || || | ||| |||||||| || || || ||||| Sbjct 62344 CCATCTTCCAACTGCTTACCAGCGAAGATGAGACGTTGCTGATCTGGTGGAATACCTTCC 62403 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || ||||||||||| |||||| || | || || | ||| || || | ||| Sbjct 62404 TTATCTTGAATTTTGGATTTGACATTTTCGATAGTATCACTTGGTTCGACTTCCAAGGTA 62463 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || |||||||| || | || || |||||||| ||||| Sbjct 62464 ATTGTTTTACCAGTGAGTGTCTTGACGAAAATCTGCAT 62501 Score = 109 bits (120), Expect = 6e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 || || |||||||| ||||| ||||| ||||||| | ||| | || || | || Sbjct 62527 TGAAGTGTGGATTCTTTTTGGATGTTATAGTCGCTTAGTGTGCGGCCATCTTCTAATTGC 62586 Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || || ||||||| ||| |||||||| || || || |||||||| |||||||||||| Sbjct 62587 TTACCAGCGAAAATCAGACGTTGCTGATCTGGTGGGATACCTTCTTTGTCTTGAATTTTT 62646 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 |||||| || | || || | ||| || || | ||||| |||||||| || Sbjct 62647 GATTTGACATTTTCGATAGTATCACTTGGTTCGACTTCCAAGGTAATTGTTTTACCAGTG 62706 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 | || || |||||||| ||||| Sbjct 62707 AGTGTCTTGACGAAAATCTGCAT 62729 Score = 105 bits (116), Expect = 7e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 || || |||||||| ||||| ||||| ||||||| | ||| | || || | || Sbjct 62755 TGAAGAGTGGATTCTTTTTGGATGTTATAGTCGCTTAGCGTGCGGCCATCTTCCAATTGC 62814 Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || || ||||| | ||| |||||||| || || || |||||||| ||||||||||| Sbjct 62815 TTACCAGCGAAAATAAGACGTTGCTGATCTGGTGGGATACCTTCTTTGTCTTGAATTTTG 62874 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 |||||| || | || || | ||| || || | ||||||||||| || ||| Sbjct 62875 GATTTGACATTTTCGATAGTATCACTTGGTTCGACTTCTAAGGTAATGGTTTTTCCCGTT 62934 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || || ||||| Sbjct 62935 AAAGTCTTGACAAATATCTGCAT 62957 >seq1402 Length=1917717 Score = 89.7 bits (98), Expect = 5e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 9088 ATTAAAGAGCTGTATAAAACCGTTTGGGAAATGAAGCAAAGCACGCTGATCGGCATGGCT 9147 ||||||| | | ||||||||||| |||||||| ||||| || |||||| ||||| Sbjct 1405060 ATTAAAGCGTTATATAAAACCGTATGGGAAATTTCTCAAAGAACCTTGATCGATATGGCA 1405119 Query 9148 GCGGATAGAGGCGCTTTTATTGATCAGAGTCAATCTTTTAACGT 9191 || ||| | || |||| |||||||| |||||||| |||||||| Sbjct 1405120 GCTGATCGGGGAGCTTACATTGATCAAAGTCAATCATTTAACGT 1405163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505389467083280