Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoplax_20adhaerens_20[refseq_20GCF_5F000150275.1_202008-06-17] 1,414 sequences; 105,631,681 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1375 129 5e-25 seq1402 93.3 4e-14 >seq1375 Length=284262 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || || | ||||| || | |||||| || || ||||| || || |||||||||| Sbjct 63413 TGCCGCCACGGAGACGCAAGACAAGATGTAAAGTCGACTCTTTCTGGATGTTGTAGTCGC 63472 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 ||| | || | ||||| | ||||||||| ||| |||| | ||| |||||||| || | Sbjct 63473 TCAAAGTACGGCCATCTTCTAACTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGTG 63532 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || ||||| ||||||| ||| | |||| | ||| || | | |||| Sbjct 63533 GAATTCCTTCCTTATCCTGGATCTTGGATTTGACATTTTCGATAGTATCGCTTGGCTCAA 63592 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||| | ||| || | ||| || |||| |||||| || || |||||||| Sbjct 63593 CTTCCAAAGTAATGGTTTTTCCTGTCAAAGTTTTGACGAAAATTTGCAT 63641 Score = 107 bits (118), Expect = 2e-18 Identities = 169/242 (70%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 27007 TTTCATAATTATTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAA 27066 |||| || | ||| || || || | |||| |||||| || | ||||| || ||||| | Sbjct 62261 TTTCTTATTAATTACCACCACGAAGACGCAGTACCAAGTGAAGTGTAGATTCCTTTTGGA 62320 Query 27067 TATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCT 27126 | ||||||||||| | |||| | ||||| | ||| ||||| ||| | |||||||| | Sbjct 62321 TGTTGTAGTCGCTTAGCGTGCGACCATCTTCCAACTGCTTACCAGCGAAGATGAGACGTT 62380 Query 27127 GTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGT 27186 | ||||| || || | ||| || ||||| || ||| ||| | |||| | ||| | Sbjct 62381 GCTGATCTGGTGGAATACCTTCCTTATCTTGAATTTTGGATTTGACATTTTCGATAGTAT 62440 Query 27187 CTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCA 27246 | | | ||| ||||| | || || | ||| || || || || || || || || |||| Sbjct 62441 CACTTGGTTCGACTTCCAAGGTAATTGTTTTACCAGTGAGTGTCTTGACGAAAATCTGCA 62500 Query 27247 TA 27248 || Sbjct 62501 TA 62502 Score = 105 bits (116), Expect = 6e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 ||||||||||| || | || || |||||||| |||||||| ||||| | | || || Sbjct 62971 CGCAATACCAAGTGGAGTGTGGATTCTTTTTGGATATTGTAATCGCTTAATGTACGGCCG 63030 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| | ||||| || ||| | || || ||||||||||| || || | || ||||| Sbjct 63031 TCTTCCAATTGTTTGCCAGCGAATATAAGTCGCTGTTGATCTGGAGGAATGCCTTCTTTG 63090 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||||| |||| | |||| | || || | | ||| ||||| | ||| || Sbjct 63091 TCTTGAATCTTTGACTTCACGTTTTCAATGGTATCACTTGGTTCCACTTCCAAAGTGATG 63150 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | ||| || || | |||||| || || || |||||| Sbjct 63151 GTTTTTCCAGTTAAAGTTTTGACGAAAATCTGCATA 63186 >seq1402 Length=1917717 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 131561 TACAACGTTTCAAAGTTTTGGCCAAACGAACTGTCCAAATTGGGACATTCGCTGGGACAC 131620 || ||| ||||||| | || |||| | | | | ||| ||||| || | || ||| Sbjct 1403109 TATAACTTTTCAAATTCTTCGCCATAAGTATCATGTAAACCTGGACAATCATTCGGGCAC 1403050 Query 131621 ATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAACAAATCCGGCACCCATAAC 131680 |||| |||||| || ||||| | ||||||||| ||||||||||||||||||| ||| | Sbjct 1403049 ATTAACGACCATACTCCGTTTTCTTCAACTCGTTTCATAAACAAATCCGGCATCCACATT 1402990 Query 131681 GCGTACAACAGATCTC 131696 || || |||| ||||| Sbjct 1402989 GCATAAAACAAATCTC 1402974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424927077052368