Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoplax_20adhaerens_20[refseq_20GCF_5F000150275.1_202008-06-17] 1,414 sequences; 105,631,681 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq1375 165 7e-36 >seq1375 Length=284262 Score = 165 bits (182), Expect = 7e-36 Identities = 177/234 (76%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || |||||| || ||||| || ||| | || ||||| | ||||| | ||||||||||| Sbjct 63417 CGGCATGCAAATTTTTGTCAAGACTTTAACTGGCAAAACGATTACCTTAGAAGTGGAACC 63358 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 ||| | ||||| | |||||| |||||||||||||||||||| || |||||||| Sbjct 63357 CAGTGACACCATTGAAAACGTCAAATCCAAAATTCAAGACAAAGAAGGTATTCCACCCGA 63298 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 ||| || |||||||| | ||| |||||||| | ||||| || || | |||||| Sbjct 63297 TCAGCAACGTTTAATTTTCGCTGGCAAACAGCTAGAAGATGGTCGCACTCTGAGCGATTA 63238 Query 27164 CAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| || || || ||||| | |||||||||||||| || || ||||| || Sbjct 63237 CAACATCCAGAAAGAATCGACACTTCATTTGGTTTTGCGCTTACGTGGTGGTAT 63184 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || |||||| | || || || | || ||| | ||||||||||| Sbjct 63185 ATGCAGATTTTCGTCAAAACTTTAACTGGAAAAACCATCACTTTGGAAGTGGAACCAAGT 63126 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || || ||| |||||||||||||||||||| || || |||||| Sbjct 63125 GATACCATTGAAAACGTGAAGTCAAAGATTCAAGACAAAGAAGGCATTCCTCCAGATCAA 63066 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | |||| ||| |||||||||||||||||| | || | ||||||||| Sbjct 63065 CAGCGACTTATATTCGCTGGCAAACAATTGGAAGACGGCCGTACATTAAGCGATTACAAT 63006 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||| || || || | || ||||| |||||| | || ||||| || Sbjct 63005 ATCCAAAAAGAATCCACACTCCACTTGGTATTGCGTCTTCGTGGTGGTAT 62956 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||| || ||| | || || || | ||||| | ||||| ||||| Sbjct 62957 ATGCAGATATTTGTCAAGACTTTAACGGGAAAAACCATTACCTTAGAAGTCGAACCAAGT 62898 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | |||||| |||||||||||||||||||| || ||||| ||||| Sbjct 62897 GATACTATCGAAAATGTCAAATCCAAAATTCAAGACAAAGAAGGTATCCCACCAGATCAG 62838 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | ||| || || ||||||||||| | || | ||| || ||| Sbjct 62837 CAACGTCTTATTTTCGCTGGTAAGCAATTGGAAGATGGCCGCACGCTAAGCGACTATAAC 62778 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||| || || || | ||||| || | ||| | || ||||| || Sbjct 62777 ATCCAAAAAGAATCCACTCTTCATTTAGTGCTTCGTCTTCGTGGTGGGAT 62728 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || || || | ||||| | ||||| ||||| Sbjct 62501 ATGCAGATTTTCGTCAAGACACTCACTGGTAAAACAATTACCTTGGAAGTCGAACCAAGT 62442 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | |||||| ||||||||||| || ||||| || ||||| ||||| Sbjct 62441 GATACTATCGAAAATGTCAAATCCAAAATTCAAGATAAGGAAGGTATTCCACCAGATCAG 62382 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | ||| || || || |||||||| || || | ||| |||||| Sbjct 62381 CAACGTCTCATCTTCGCTGGTAAGCAGTTGGAAGATGGTCGCACGCTAAGCGACTACAAC 62322 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || |||||||| || || | || ||||| ||||| | || ||||| Sbjct 62321 ATCCAAAAGGAATCTACACTTCACTTGGTACTGCGTCTTCGTGGTGG 62275 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || || || | ||||| | ||||| ||||| Sbjct 62729 ATGCAGATTTTCGTCAAGACACTCACTGGTAAAACAATTACCTTGGAAGTCGAACCAAGT 62670 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | |||||| ||||||||||||||||||||| || ||||| ||||| Sbjct 62669 GATACTATCGAAAATGTCAAATCAAAAATTCAAGACAAAGAAGGTATCCCACCAGATCAG 62610 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | ||| || || ||||| ||||| | || | ||| || ||| Sbjct 62609 CAACGTCTGATTTTCGCTGGTAAGCAATTAGAAGATGGCCGCACACTAAGCGACTATAAC 62550 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||| || || || | ||||| || | ||| | || ||||| || Sbjct 62549 ATCCAAAAAGAATCCACACTTCATTTAGTGCTACGTCTTCGTGGTGGTAT 62500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434910712817280