Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoplax_20adhaerens_20[refseq_20GCF_5F000150275.1_202008-06-17] 1,414 sequences; 105,631,681 total letters Query= NC_028955.1 Length=197361 Score E Sequences producing significant alignments: (Bits) Value seq86 293 3e-74 >seq86 Length=1065 Score = 293 bits (324), Expect = 3e-74 Identities = 351/478 (73%), Gaps = 39/478 (8%) Strand=Plus/Minus Query 184505 TGGGATCATGTATTCCTTGGTTTATTCTGGATGTATAATTGCATCTCTATAGTAATCTTC 184564 ||||||||||||||||| || ||||||||||||||||||| || ||| | ||||||||| Sbjct 1032 TGGGATCATGTATTCCTAGGATTATTCTGGATGTATAATTCAATTTCTGTTGTAATCTTC 973 Query 184565 CACTTTAGTTGGAGAATGCAA---GATGTATGGGGTC----------------------- 184598 ||||||||||||| ||||||| ||||| |||||| Sbjct 972 CACTTTAGTTGGAAAATGCAATCGGATGTTTGGGGTACTGTAACTCCAGATGGAAGTATT 913 Query 184599 -----TATCA--GGAGGTAACTTTGCTCAGAGTTCAATTACAATCAATGGATGGTTGAGA 184651 ||||| || || |||||||| || ||||| ||||| || ||||| ||||| | Sbjct 912 TCACATATCACAGGTGGAAACTTTGCACAAAGTTCTATTACGATTAATGGTTGGTTACGT 853 Query 184652 GACTTCTTATGGTCACAGTCAAGTCAAGTTCT-CAATAGTTATGGACAAGA--CATCAGC 184708 || ||||||||||| || | |||||| | |||| | |||| || ||||||| Sbjct 852 GATTTCTTATGGTCGCAAGCTTCTCAAGTAATTCAATCAT-ATGGTTCAGCTGCATCAGC 794 Query 184709 ATGTATGGTTTGCTATTTCTTGGAGCACATTTTGTATGGGCATTCAGTTTGATGTTCCTA 184768 || ||||||| | || | || ||||||||| | |||||||| ||||| |||||| || Sbjct 793 AT--ATGGTTTAATCTTCTTAGGTGCACATTTTATTTGGGCATTTAGTTTAATGTTCTTA 736 Query 184769 TGGAGTGGTAGAGGATACTGGCAAGAGTTGATAGAGTCTATTGCTTGGGCACATAACAAA 184828 | |||||| | || || |||||||| || || ||||| |||| ||||||||| || ||| Sbjct 735 TTTAGTGGTCGTGGCTATTGGCAAGAATTAATTGAGTCAATTGTTTGGGCACACAATAAA 676 Query 184829 TTAAAACTTGCACCTACCATTCAACCAAGAGCAATGTCAATTACACAAGGACGTGCTGTT 184888 |||| ||||||| | ||||||||| |||| | ||||||||||| |||||||| Sbjct 675 CTAAATTTTGCACCAGCAATTCAACCACGAGCTTTAAGTATTACACAAGGTCGTGCTGTA 616 Query 184889 GGAGTTGCACACTTCTTACTTGGAGGTATTGCCACAACATGGGCATTCTTCTTTGCTC 184946 || | ||||| | |||||||| ||||| | ||||| |||||||||||||| |||| Sbjct 615 GGTTTAGCACATTATTTACTTGGTGGTATCGGTACAACTTGGGCATTCTTCTTAGCTC 558 Score = 190 bits (210), Expect = 3e-43 Identities = 281/393 (72%), Gaps = 10/393 (3%) Strand=Plus/Minus Query 184981 AACAAAATTTCCAAAATTTAATCAAGATTTGGCAAGTGATCCTACAACTAGGAGATTGTG 185040 ||| ||||||||||| |||| |||| | ||| ||||| |||| | ||| | || Sbjct 396 AACTAAATTTCCAAAGTTTAGCCAAGCCCTTGCACAAGATCCAGCAACGCGAAGAATTTG 337 Query 185041 GTATGGATTAGCAACTGCACATGACTTTGAGAGTCATGACAATATGACAGAAGAGAAGTT 185100 |||||| | || ||||||||||| || || ||||| |||||| ||||| || || Sbjct 336 GTATGGTATCGCTACTGCACATGATTTAGAAGCACATGATGGTATGACCGAAGAAAATTT 277 Query 185101 ATATCAAAAATTATTTGCTACACACTTTGGTCATCTTGCAATTATCTTTCTATGGGTTGC 185160 ||| |||||| | || || |||| ||||||||| | ||| | ||||| ||||| || Sbjct 276 ATACCAAAAAATTTTCGCCTCACATTTTGGTCATTTAGCAGTAATCTTCTTATGGACAGC 217 Query 185161 AGGTAATTTAATTCATATAGCATGGCAAGGTAACTTTGAACAGTTTGTAGCAGACCCACA 185220 ||| |||||| | ||| | || |||||||||||||||||| | | |||||| ||||| Sbjct 216 AGGAAATTTATTCCATGTTGCTTGGCAAGGTAACTTTGAAAACTGGGTAGCAAACCCATT 157 Query 185221 ACATGTGATACCTATAGCACATAGAATATGGGATCCTCATTTTGGTCAAGGTGCAACAGA 185280 | | || | |||||| || ||| ||| |||||||| ||||| ||| || ||| | | Sbjct 156 AAAAGTTAAACCTATTGCTCATTCAATTTGGGATCCACATTTCGGTGAATCAGCATTAAA 97 Query 185281 TGCATACA-CACAGGCAGGTTCTACTTTTCCTGTGAACAGATTG--TATTCTGGACTGTA 185337 || | | | ||||| | | | ||| || | | |||| |||||||| |||| Sbjct 96 GGCGTTTAGTAAAGGCA----ATGCGTATCCAGTTA--ATATTGCTTATTCTGGTGTGTA 43 Query 185338 TCATTGGTGGTACACAGTTGGTATGAGAACTAA 185370 || |||||||||||| ||| | |||||||| Sbjct 42 CCAGTGGTGGTACACA-ATGGATTCAGAACTAA 11 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631416039524240