Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoplax_20adhaerens_20[refseq_20GCF_5F000150275.1_202008-06-17] 1,414 sequences; 105,631,681 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1375 158 3e-33 seq1026 107 5e-18 seq1412 98.7 2e-15 >seq1375 Length=284262 Score = 158 bits (174), Expect = 3e-33 Identities = 168/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | |||||| |||||||||||||||| |||||||||| || || Sbjct 62964 ACGAAGACGCAATACCAAGTGGAGTGTGGATTCTTTTTGGATATTGTAATCGCTTAATGT 63023 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || ||||| | || || |||||||| |||||||| ||||| || || ||||| || Sbjct 63024 ACGGCCGTCTTCCAATTGTTTGCCAGCGAATATAAGTCGCTGTTGATCTGGAGGAATGCC 63083 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| |||||||| |||||| |||||| ||| ||||| || | |||||| || || Sbjct 63084 TTCTTTGTCTTGAATCTTTGACTTCACGTTTTCAATGGTATCACTTGGTTCCACTTCCAA 63143 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || || || || |||||||| | ||| | ||||| Sbjct 63144 AGTGATGGTTTTTCCAGTTAAAGTTTTGACGAAAATCTGCAT 63185 Score = 145 bits (160), Expect = 2e-29 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || || || |||||||| |||| ||||||||| || ||| | |||||||||||||| Sbjct 63211 TGAAGTGTCGATTCTTTCTGGATGTTGTAATCGCTCAGAGTGCGACCATCTTCTAGCTGT 63270 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || |||||||| || | ||||| || ||||| ||||||||||| |||||||| || || Sbjct 63271 TTGCCAGCGAAAATTAAACGTTGCTGATCGGGTGGAATACCTTCTTTGTCTTGAATTTTG 63330 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 || || ||| |||||||| || |||||| ||||| || ||||| ||||| || Sbjct 63331 GATTTGACGTTTTCAATGGTGTCACTGGGTTCCACTTCTAAGGTAATCGTTTTGCCAGTT 63390 Query 225691 AAAGTTTTTATGAACACTTGCAT 225713 ||||| || | || | |||||| Sbjct 63391 AAAGTCTTGACAAAAATTTGCAT 63413 Score = 134 bits (148), Expect = 3e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | || |||||| || | ||| || ||||| |||| ||||| ||| |||||| Sbjct 63420 ACGGAGACGCAAGACAAGATGTAAAGTCGACTCTTTCTGGATGTTGTAGTCGCTCAAAGT 63479 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||||| ||| || |||||||| || | |||||||| || || ||||| || Sbjct 63480 ACGGCCATCTTCTAACTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATTCC 63539 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| || |||||||| || ||| |||||| || || | || || || || Sbjct 63540 TTCCTTATCCTGGATCTTGGATTTGACATTTTCGATAGTATCGCTTGGCTCAACTTCCAA 63599 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || || || ||||||||||| | ||| | |||||| Sbjct 63600 AGTAATGGTTTTTCCTGTCAAAGTTTTGACGAAAATTTGCAT 63641 Score = 116 bits (128), Expect = 9e-21 Identities = 150/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | || ||||||||||||||||||| || || ||| | || Sbjct 62736 ACGAAGACGAAGCACTAAATGAAGAGTGGATTCTTTTTGGATGTTATAGTCGCTTAGCGT 62795 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | ||||| |||||||| ||||| ||||| || || || || ||||| Sbjct 62796 GCGGCCATCTTCCAATTGCTTACCAGCGAAAATAAGACGTTGCTGATCTGGTGGGATACC 62855 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| |||||||| || || || ||| |||||| || || | ||| || ||||| Sbjct 62856 TTCTTTGTCTTGAATTTTGGATTTGACATTTTCGATAGTATCACTTGGTTCGACTTCTAA 62915 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 || || || || ||||| ||||| || Sbjct 62916 GGTAATGGTTTTTCCCGTTAAAGTCTT 62942 Score = 113 bits (124), Expect = 1e-19 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||| || | ||| || || ||||| ||||||| ||||| ||| | || Sbjct 62280 ACGAAGACGCAGTACCAAGTGAAGTGTAGATTCCTTTTGGATGTTGTAGTCGCTTAGCGT 62339 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | |||||| ||||||||||| || ||||| || || || |||||||| Sbjct 62340 GCGACCATCTTCCAACTGCTTACCAGCGAAGATGAGACGTTGCTGATCTGGTGGAATACC 62399 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| ||||| || || || ||| |||||| || || | ||| || || || Sbjct 62400 TTCCTTATCTTGAATTTTGGATTTGACATTTTCGATAGTATCACTTGGTTCGACTTCCAA 62459 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || || || || | || || | ||| | ||||| Sbjct 62460 GGTAATTGTTTTACCAGTGAGTGTCTTGACGAAAATCTGCAT 62501 Score = 104 bits (114), Expect = 6e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | || || |||||||||||||||| || || ||| | || Sbjct 62508 ACGAAGACGTAGCACTAAATGAAGTGTGGATTCTTTTTGGATGTTATAGTCGCTTAGTGT 62567 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||||| ||||| |||||||| || || ||||| || || || || ||||| Sbjct 62568 GCGGCCATCTTCTAATTGCTTACCAGCGAAAATCAGACGTTGCTGATCTGGTGGGATACC 62627 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| |||||||| || ||| || ||| |||||| || || | ||| || || || Sbjct 62628 TTCTTTGTCTTGAATTTTTGATTTGACATTTTCGATAGTATCACTTGGTTCGACTTCCAA 62687 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || || || || | || || | ||| | ||||| Sbjct 62688 GGTAATTGTTTTACCAGTGAGTGTCTTGACGAAAATCTGCAT 62729 >seq1026 Length=4640 Score = 107 bits (118), Expect = 5e-18 Identities = 83/99 (84%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 || ||||||||||||||||| || || ||||||||||| ||||| ||||||||||| ||| Sbjct 4255 AAAATTTGACCATCAGTAATTGATATTACATTTGTAGGTATATATGCAGAAACATCTCCT 4196 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCA 4569 ||||| ||||| | | ||||| ||||||| |||||| Sbjct 4195 GCTTGCGTTTCTATTATTGGTAATGCTGTTAAAGATCCA 4157 >seq1412 Length=9661127 Score = 98.7 bits (108), Expect = 2e-15 Identities = 81/99 (82%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 4477 TGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCTGCTTGT 4536 || ||||||||||| || || ||||| ||||||||||||||||| |||||||| ||||| Sbjct 914370 TGTCCATCAGTAATTGAAATTACATTCGTAGGGATATAAGCAGATACATCACCAGCTTGA 914429 Query 4537 GTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCA 4575 ||||| | || || || || || || || ||||||||| Sbjct 914430 GTTTCAATAATTGGCAATGCAGTAAGAGAGCCACCACCA 914468 Score = 87.8 bits (96), Expect = 4e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 4477 TGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCTGCTTGT 4536 |||| ||||||||| ||||| |||||| |||| ||||||||||| |||||| | ||| | Sbjct 3474126 TGACTATCAGTAATGGAGATCACATTTATAGGAATATAAGCAGATACATCAGCAGCTCGC 3474067 Query 4537 GTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCA 4572 | || ||||| || || ||| | ||||||||| || Sbjct 3474066 GCATCAACAACTGGCAATGCTTTCAGTGATCCATCA 3474031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192509595061316