Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoplax_20adhaerens_20[refseq_20GCF_5F000150275.1_202008-06-17] 1,414 sequences; 105,631,681 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1402 104 3e-17 >seq1402 Length=1917717 Score = 104 bits (114), Expect = 3e-17 Identities = 134/184 (73%), Gaps = 1/184 (1%) Strand=Plus/Minus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| |||| ||||||||||| || | || | | || | || || || ||||| | | Sbjct 1405219 TCCAGGCGTAAAAATGCATGCTGGTTAACTTCGCAAAATTGGGCTCAGCAATATGTACGT 1405160 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 | | || ||||||||||| ||| ||||||| | |||||| ||||| | || | ||| Sbjct 1405159 TAAATGATTGACTTTGATCAATGTAAGCTCCCCGATCAGCTGCCATATCGATCAAGGTTC 1405100 Query 76969 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGGTT-TGTA 77027 |||||| ||||||||| | ||||| | | ||| ||||||||||| | ||| | || Sbjct 1405099 TTTGAGAAATTTCCCATACGGTTTTATATAACGCTTTAATATCATCTGGTATGTTGTTTA 1405040 Query 77028 TTTT 77031 |||| Sbjct 1405039 TTTT 1405036 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 77913 GTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGG 77972 ||||||| | ||||||||| || || || ||||| || || || || ||||| ||| Sbjct 1403112 GTATATAACTTTTCAAATTCTTCGCCATAAGTATCATGTAAACCTGGACAATCATTCGGG 1403053 Query 77973 CACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCAT 78032 ||||| || ||||| | || | ||| | ||||||||||||||| | ||| || ||||| Sbjct 1403052 CACATTAACGACCATACTCCGTTTTCTTCAACTCGTTTCATAAACAAATCCGGCATCCAC 1402993 Query 78033 AGAGCAATAAATAGATCTCG 78052 | ||| ||| | |||||| Sbjct 1402992 ATTGCATAAAACAAATCTCG 1402973 Score = 89.7 bits (98), Expect = 7e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 || |||||||| ||||| || | | || |||||||| || ||||| || || | ||| Sbjct 1404665 TGGAATTCTCCTGACAAAACACGTCTAGAATAAATATTGCTTGTATACGGCTCAATTGAT 1404606 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 || || || || | ||||||||||||||||| |||||||| || || | | ||| ||| Sbjct 1404605 TCGTTATTACCAAGGATTTGAGCAGTAGAAGCCGTTGGCATTGGAGCTAATAGTAAGCTA 1404546 Query 77247 TTTC 77250 |||| Sbjct 1404545 TTTC 1404542 Score = 86.0 bits (94), Expect = 9e-12 Identities = 122/169 (72%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 78742 CACTAAATAGttttttt-GTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGA 78800 |||| || ||||||||| ||||| || || | |||||| || || || | ||||| ||| Sbjct 1401092 CACTGAA-AGTTTTTTTCGTTTCTTTATGCAAATTAGAAACTGCAATACGAGCAGCAAGA 1401034 Query 78801 ATAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCT 78860 | |||||||||||||| | |||||| | || || ||||| || || | ||||| Sbjct 1401033 AGCGCATAATCAGGATGGTTTGTAGTCATTGACGCGGCAATTTCAGCGGCCAGGGTATCT 1400974 Query 78861 AACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTTCATGG 78909 | || | ||| || || || ||||| | || ||| |||||||||| Sbjct 1400973 AGTTCCACAGTCGTCACACCGTTATAAATACCAGCAATTACTTTCATGG 1400925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694656521728960