Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoplax_20adhaerens_20[refseq_20GCF_5F000150275.1_202008-06-17] 1,414 sequences; 105,631,681 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1402 104 3e-17 >seq1402 Length=1917717 Score = 104 bits (114), Expect = 3e-17 Identities = 134/184 (73%), Gaps = 1/184 (1%) Strand=Plus/Minus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||| |||| ||||||||||| |||| || | | || | || || || ||||| | | Sbjct 1405219 TCCAGGCGTAAAAATGCATGCTGGTTAACTTCGCAAAATTGGGCTCAGCAATATGTACGT 1405160 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 | | || ||||||||||| ||| ||||||| | |||||| ||||| | || | ||| Sbjct 1405159 TAAATGATTGACTTTGATCAATGTAAGCTCCCCGATCAGCTGCCATATCGATCAAGGTTC 1405100 Query 75564 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGG-AAGATTTGTA 75622 |||||| ||||||||| | ||||| | | ||| ||||||||||| | | | | || Sbjct 1405099 TTTGAGAAATTTCCCATACGGTTTTATATAACGCTTTAATATCATCTGGTATGTTGTTTA 1405040 Query 75623 TTTT 75626 |||| Sbjct 1405039 TTTT 1405036 Score = 102 bits (112), Expect = 1e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 76507 TGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGG 76566 |||||||||| ||||||||| || || || ||||| ||||| ||||| |||||||| Sbjct 1403113 TGTATATAACTTTTCAAATTCTTCGCCATAAGTATCATGTAAACCTGGACAATCATTCGG 1403054 Query 76567 ACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCA 76626 ||||| || ||||| | || | ||| | ||| ||||||||||| | ||| || ||||| Sbjct 1403053 GCACATTAACGACCATACTCCGTTTTCTTCAACTCGTTTCATAAACAAATCCGGCATCCA 1402994 Query 76627 TAGAGCAATAAATAGATCTCG 76647 | ||| ||| | |||||| Sbjct 1402993 CATTGCATAAAACAAATCTCG 1402973 Score = 84.2 bits (92), Expect = 3e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 || |||||||| ||||| || | || || |||||||| || ||||| || || | ||| Sbjct 1404665 TGGAATTCTCCTGACAAAACACGTCTAGAATAAATATTGCTTGTATACGGCTCAATTGAT 1404606 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 || || || || | ||||||||||| ||||| || ||||| || || | | ||| ||| Sbjct 1404605 TCGTTATTACCAAGGATTTGAGCAGTAGAAGCCGTTGGCATTGGAGCTAATAGTAAGCTA 1404546 Query 75842 TTTC 75845 |||| Sbjct 1404545 TTTC 1404542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712921798884480