Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoplax_20adhaerens_20[refseq_20GCF_5F000150275.1_202008-06-17] 1,414 sequences; 105,631,681 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1375 105 2e-17 >seq1375 Length=284262 Score = 105 bits (116), Expect = 2e-17 Identities = 153/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | |||||| || || |||||||||||||| || ||| || || | |||||| Sbjct 62518 AGCACTAAATGAAGTGTGGATTCTTTTTGGATGTTATAGTCGCTTAGTGTGCGGCCATCT 62577 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 |||| || || ||||| || || | ||||| || | | ||| ||||| || ||| Sbjct 62578 TCTAATTGCTTACCAGCGAAAATCAGACGTTGCTGATCTGGTGGGATACCTTCTTTGTCT 62637 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 ||||||||| ||||||| | || | | || ||| || ||||| | ||||| Sbjct 62638 TGAATTTTTGATTTGACATTTTCGATAGTATC---ACTTGGTTCGACTTCCAAGGTAATT 62694 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || ||||| ||||| ||||| | |||||| Sbjct 62695 GTTTTACCAGTGAGTGTCTTGACGAAAATCTGCAT 62729 Score = 104 bits (114), Expect = 5e-17 Identities = 151/211 (72%), Gaps = 7/211 (3%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| ||||| || |||||||||||||| ||| || || | |||||||| | Sbjct 62295 CAAG-TGAAGTGTAGATTCCTTTTGGATGTTGTAGTCGCTTAGCGTGCGACCATCTTCCA 62353 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || || |||||||| || | ||||| || | | || |||||||| ||||||| Sbjct 62354 ACTGCTTACCAGCGAAGATGAGACGTTGCTGATCTGGTGGAATACCTTCCTTATCTTGAA 62413 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTT 152073 |||| ||||||| | || | | || ||| || ||||| | ||||| |||| Sbjct 62414 TTTTGGATTTGACATTTTCGATAGTATC---ACTTGGTTCGACTTCCAAGGTAATTGTTT 62470 Query 152074 TGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || ||||| ||||| ||||| | |||||| Sbjct 62471 TACCAGTGAGTGTCTTGACGAAAATCTGCAT 62501 Score = 100 bits (110), Expect = 7e-16 Identities = 152/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | ||||||||| || |||||||||||||| || ||| || || | |||||| Sbjct 62746 AGCACTAAATGAAGAGTGGATTCTTTTTGGATGTTATAGTCGCTTAGCGTGCGGCCATCT 62805 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | || || ||||| ||||| | ||||| || | | ||| ||||| || ||| Sbjct 62806 TCCAATTGCTTACCAGCGAAAATAAGACGTTGCTGATCTGGTGGGATACCTTCTTTGTCT 62865 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 |||||||| ||||||| | || | | || ||| || ||||| | ||||| Sbjct 62866 TGAATTTTGGATTTGACATTTTCGATAGTATC---ACTTGGTTCGACTTCTAAGGTAATG 62922 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| ||||| | |||||| || || | |||||| Sbjct 62923 GTTTTTCCCGTTAAAGTCTTGACAAATATCTGCAT 62957 Score = 100 bits (110), Expect = 7e-16 Identities = 147/207 (71%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 |||||| || || ||||| ||||||||||||||| | ||| | ||||||||||| Sbjct 63210 ATGAAGTGTCGATTCTTTCTGGATGTTGTAATCGCTCAGAGTGCGACCATCTTCTAGCTG 63269 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 ||| || ||||| || | | ||||| || | | || ||||| || ||||||||||| Sbjct 63270 TTTGCCAGCGAAAATTAAACGTTGCTGATCGGGTGGAATACCTTCTTTGTCTTGAATTTT 63329 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTTTGCC 152077 |||||| | || | | |||| ||| || ||||| | ||||| |||||||| Sbjct 63330 GGATTTGACGTTTTCAATGGTGTC---ACTGGGTTCCACTTCTAAGGTAATCGTTTTGCC 63386 Query 152078 CGTGAGAGTCTTCACGAAGACCTGCAT 152104 || | |||||| || || | ||||| Sbjct 63387 AGTTAAAGTCTTGACAAAAATTTGCAT 63413 Score = 95.1 bits (104), Expect = 3e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954 ||||||||| | ||| |||||||| ||||||||||| ||| ||||| | |||||||| Sbjct 63432 GACAAGATGTAAAGTCGACTCTTTCTGGATGTTGTAGTCGCTCAAAGTACGGCCATCTTC 63491 Query 151955 TAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 || ||| || ||||| || | | || || || | | ||||||||||| || || Sbjct 63492 TAACTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATTCCTTCCTTATCCTG 63551 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 || || ||||||| | || | | || ||| ||||| | |||||| ||||| Sbjct 63552 GATCTTGGATTTGACATTTTCGATAGTATCGCTTGGCTCAACTTCCAAAGTAATGGTTTT 63611 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || | ||| || ||||| | ||||| Sbjct 63612 TCCTGTCAAAGTTTTGACGAAAATTTGCAT 63641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153799896372794