Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoplax_20adhaerens_20[refseq_20GCF_5F000150275.1_202008-06-17] 1,414 sequences; 105,631,681 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1375 93.3 4e-14 >seq1375 Length=284262 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||||| ||| | ||| || ||| || || || |||||||||||| Sbjct 62503 CCACCACGAAGACGTAGCACTAAATGAAGTGTGGATTCTTTTTGGATGTTATAGTCGCTT 62562 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || | ||||| || ||||| ||||| || || || || | || Sbjct 62563 AGTGTGCGGCCATCTTCTAATTGCTTACCAGCGAAAATCAGACGTTGCTGATCTGGTGGG 62622 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | || |||| | ||| |||||| || || | | ||| || || | || || Sbjct 62623 ATACCTTCTTTGT-CTTGAATTTTTGATTTGACATTTTCGATAGTATCACTTGGTTCGAC 62681 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || |||||||| || || ||||| |||||||||||||| Sbjct 62682 TTCCAAGGTAATTGTTTTACCAGTGAGTGTCTTGACGAAAATCTGCAT 62729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462295828776800