Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achlya_20hypogyna_20[genbank_20GCA_5F002081595.1_202017-04-06] 3,062 sequences; 43,398,470 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq2872 145 2e-29 seq779 145 2e-29 seq2528 120 6e-22 seq1752 104 5e-17 seq1449 104 5e-17 seq2543 89.7 1e-12 seq1761 84.2 5e-11 >seq2872 Length=3431 Score = 145 bits (160), Expect = 2e-29 Identities = 678/1055 (64%), Gaps = 36/1055 (3%) Strand=Plus/Minus Query 318991 TCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGA 319050 || ||||| || ||||| ||||||| ||||| |||||||||| | |||||||| Sbjct 2322 TCCTTGTCCTCGCCGGACTGGAAACGCCACTGGATGTACTGGTTGGCCGAGATGTCAAGG 2263 Query 319051 TGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGC 319110 || | ||| |||||||||||||| ||||| |||||||| || | |||||| || ||| Sbjct 2262 TGCTGCTCAATGTGGTGGAAAGCGTGCTGGGCCACGTACGCGAAACGCATGGCCGGGTGC 2203 Query 319111 TTCCAAACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCTT 319170 ||||| || |||| |||||| |||| | | ||||| |||| ||| || | || Sbjct 2202 TTCCAGACGGTACCCGTGGTGGGTTCCGTCTCGCCCGTAAGCATCTTGATCATCGTCGAC 2143 Query 319171 TTCCCCGCACCGTTTTCGCCCACCACACCGATCCTGGAGTTCAGCG-ATACCTGGGCAT- 319228 || || |||||||| ||| | || |||| | || || | || || | | Sbjct 2142 TTACCGGCACCGTTGGGGCCGATGACGGCGATACGCGACGAGAGGGCGCACGTGATCGTG 2083 Query 319229 TCA-CGTTG-TCAAAGATTAGTTTTTCCGTACCCGGATACTTGAACCCCACACCGCGT-A 319285 || ||||| || | | | || || ||| || ||| || | | || || | Sbjct 2082 ACATCGTTGATCGAGG----GCTTCGACGCACCAGGGTACGTGTA-CGAGCAGTTGGTCA 2028 Query 319286 GCTTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGGAACT 319345 ||||||| | |||| ||||| | ||||||| || ||||||||||||| Sbjct 2027 AACGAATGATGGGCTTGCCCTTGTTCTTGATATCGGCGAGGAAACCAGGCTCGGGGAACT 1968 Query 319346 TCCACGTGGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGACGCTTCTTCA 319405 | | | | || | | | | ||| | ||||| | | || || || || | Sbjct 1967 TGAAGGCGATCGTGGCCGCATCGAGGTCATAGTAGGCCTTGGCCTCCGGGCGGAGCTCGA 1908 Query 319406 CGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATAA 319465 |||||| ||||| || || |||| |||| ||||| |||| ||||| ||||| | Sbjct 1907 CGAACTTGGACATGTTGCCGACGTACGTCTTGAGCTTGCGGTTCTTCTCGTAGTGGATGA 1848 Query 319466 TAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACG-AAACG 319524 | ||||| || ||||||||| || |||||||| |||||||| | ||| | || Sbjct 1847 TGTTCGTGCAGACGTTGTCGAGGAAACCCGAGTCGTGCGACACAATGAGCGACGTGATCG 1788 Query 319525 TCCTTAAGGTTGATCAGGTA-TTCAATC-AACCACCTCACGTTAGACACAGAAAGATGGT 319582 | | | || | | ||||| ||| || | ||| ||||| | |||| | |||| Sbjct 1787 TGCCCATGGACG-TGAGGTAGTTC--TCGAGCCAAGCAACGTTGGCCACATCCAAGTGGT 1731 Query 319583 TGGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGA 319642 | || ||||| || || || || | | || ||| | ||||| ||||| || || ||| Sbjct 1730 TCGTGGGCTCATCGAGGAGGAGGATATCAGCCTTCTGAAGCATCGCACGAGCGAGTTCGA 1671 Query 319643 GTTTCATTTTCCACCCTCCGGAAAG---AGTGTTA-ATTGGGGCAGATTGGCGCTCAATA 319698 | ||||| ||||| || || ||||| | | | |||| | | ||||| || | Sbjct 1670 GCTTCATCTTCCAACCACCCGAAAGCGAACCGACAGCCTGGGCCTGCATGGCG-TCCGT- 1613 Query 319699 TCAAAGCCAACCGATTCTAGAGTAGTTACGATCTTTTCACGAGACCAAATGTTTTCCTTT 319758 ||||| ||||| || || || || | || | | ||| ||||| Sbjct 1612 --GAAGCCGACCGAGCTGAGCGTGTCCTGGACCTCCTTGCGGGGC---ATG---TCCTTG 1561 Query 319759 ACTTGTTCATCATTGGCAATGAAGTCAATGATAGCCGTG---TTAGAATCGGACCCGTCG 319815 | | || ||| | |||||| | || ||| | | || || | | | Sbjct 1560 AAGTCGGGGTCGTTGAGGACGAAGTCGACGA---CCGAGAGCTCAGCCTCCTCAGCCTGG 1504 Query 319816 AGATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAGAGGGGAACCCTTCAAGCTGG 319875 || | ||| || ||||| | || || | | ||| ||| ||||| || || |||||| Sbjct 1503 AGGTTGTGCTCGACGTAGACCGTCTTGAGCTCGTCCTTAGACGGGAAGCCCTCGAGCTGG 1444 Query 319876 CCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCCGTTTGGCCCACACAGACCG 319935 ||||| |||| |||||||| || || || || || ||||| || || || |||||| Sbjct 1443 CCGTTGGCAATGGCGCGCATGAGCGTCGACTTGCCGCAACCGTTGGGGCCGCAGAGACCG 1384 Query 319936 TAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAGAAGAATTTTTCCACCATAT 319995 ||||||| || || ||||| | || | |||||| || || || | ||||| || Sbjct 1383 TAGCGGTGGCCCTTCTTGAGGTTCATGCGGGCGTTGTTGAGGAGGATCATGCCACCGTAC 1324 Query 319996 GCCAGAGAAAATTCACAATCACACAGATCCTCACC 320030 || || || || || || || || || ||||| || Sbjct 1323 GCGAGGGAGAACTCGCAGTCGCAGAGGTCCTCGCC 1289 >seq779 Length=3608 Score = 145 bits (160), Expect = 2e-29 Identities = 452/686 (66%), Gaps = 18/686 (3%) Strand=Plus/Plus Query 318991 TCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGA 319050 || ||||| || ||||| ||||||| ||||| |||||||||| | ||||| || Sbjct 1217 TCCTTGTCCTCGCCGGACTGGAAACGCCACTGGATGTACTGGTTGGCCGAGATGTCCAGG 1276 Query 319051 TGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGC 319110 || | ||| || ||||||||||| ||||| |||||||| || | |||||| || ||| Sbjct 1277 TGCTGCTCAATATGGTGGAAAGCGTGCTGGGCCACGTACGCGAAACGCATGGCCGGGTGC 1336 Query 319111 TTCCAAACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCTT 319170 ||||||| |||| |||||| |||| | | |||||||||| ||| || | || Sbjct 1337 TTCCAAAGCGTACCCGTGGTGGGTTCCGTCTCGCCCGTGAGCATCTTGATCATCGTCGAC 1396 Query 319171 TTCCCCGCACCGTTTTCGCCCACCACACCGATCCTGGAGTTC--AGCGATACCTGGGCAT 319228 || || |||||||| || | ||| |||| | || | |||| | || Sbjct 1397 TTACCGGCACCGTTGGGCCCGATGACAGCGATACGCGACGACAAAGCGCATGTTACGC-- 1454 Query 319229 TCACGTTGTCAAAGAT-TAGTTTTTC--CGTACCCGGATACTTGAACCCCACACCGCGT- 319284 | ||||||| ||| || ||| || ||| || ||| || | | || || Sbjct 1455 TGACGTTGT---TGATCGAGGGCTTCGACGCACCAGGGTACGTGTA-CGAGCAGTTGGTC 1510 Query 319285 AGCTTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGGAAC 319344 | ||||||| | |||| ||||| | ||||||| |||||||| |||||| Sbjct 1511 AAACGAATGATGGGCTTGCCCTTGTTCTTGATATCGGCGAGGAAACCGGGCTCAGGGAAC 1570 Query 319345 TTCCACGTGGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGACGCTTCTTC 319404 || | | | | | || ||| | |||||| | | || ||||| |||| Sbjct 1571 TTGAAAGCAACTGTAGCCGCGTCGAGGTCATAGTAAGCCTTGGCCTCCGGACGAATCTTG 1630 Query 319405 ACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATA 319464 || |||||||||| || || |||| |||| ||||| |||| ||||| ||||| Sbjct 1631 ACAAACTCGGACATGTTGCCGACGTACGTCTTGAGCTTACGGTTCTTCTCGTAGTGGATG 1690 Query 319465 ATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACG-AAAC 319523 || ||||| || ||||||||| || |||||||| |||||||| | ||| | | Sbjct 1691 ATGTTCGTGCAGACGTTGTCGAGGAAACCCGAGTCGTGCGACACAATGAGCGACGTGATC 1750 Query 319524 GTCCTTAAGGTTGATCAGGTA-TTCAATC-AACCACCTCACGTTAGACACAGAAAGATGG 319581 || | || | | ||||| ||| || | ||| ||||| | |||| | ||| Sbjct 1751 GTGTCCATGGACG-TGAGGTAGTTC--TCGAGCCAAGCAACGTTGGCCACATCCAAGTGG 1807 Query 319582 TTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCG 319641 || || ||||| || || || || | | || ||| | ||||| ||||| || || || Sbjct 1808 TTCGTGGGCTCATCGAGGAGGAGGATATCGGCCTTCTGAAGCATCGCACGAGCGAGTTCG 1867 Query 319642 AGTTTCATTTTCCACCCTCCGGAAAG 319667 || ||||| ||||| || || ||||| Sbjct 1868 AGCTTCATCTTCCAACCACCCGAAAG 1893 Score = 93.3 bits (102), Expect = 9e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 319815 GAGATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAGAGGGGAACCCTTCAAGCTG 319874 ||| | ||| || ||||| | || || | | ||| || ||||| || || ||||| Sbjct 2035 GAGGTTGTGCTCGACGTAGACCGTCTTGAGCTCGTCCTTGGACGGGAAGCCCTCGAGCTG 2094 Query 319875 GCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCCGTTTGGCCCACACAGACC 319934 |||||| |||| |||||||| || || || || || ||||| | || || ||||| Sbjct 2095 GCCGTTGGCAATGGCGCGCATGAGCGTCGACTTGCCGCAACCGTTGCGACCGCAGAGACC 2154 Query 319935 GTAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAGAAGAATTTTTCCACCATA 319994 |||||||| || || ||||||| || | |||||||| || || | ||||| || Sbjct 2155 GTAGCGGTGACCCTTCTTGAGGTTGAGGCGAGCATTGTTCAGGAGGATCATGCCACCGTA 2214 Query 319995 TGCCAGAGAAAATTCACAATCACACAGATCCTCACC 320030 || || || || || || || || || ||||| || Sbjct 2215 CGCGAGGGAGAACTCGCAGTCGCAGAGGTCCTCGCC 2250 >seq2528 Length=14935 Score = 120 bits (132), Expect = 6e-22 Identities = 296/446 (66%), Gaps = 6/446 (1%) Strand=Plus/Minus Query 230176 GCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGC 230235 ||||| || |||| |||| | ||| ||||| ||| | || || || |||||| Sbjct 5234 GCCGAACGCATCGTTGCCTTCGCTGCTGTCGAAGGCATTTTCTTCTCTGGCTCCTTCTGC 5175 Query 230236 GCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTC 230295 ||||||| ||||| ||| ||| | ||||| ||| | | | || || ||| || Sbjct 5174 TCCATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCGGGCTTGAGCTTTTCGAATGAGCTC 5115 Query 230296 ATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATTCAAAGCTCCAG 230355 ||| |||||||| || || || | |||| | || ||||| || |||||| Sbjct 5114 ATCTCGCGCGACGAAGGCCTTCACTGCGACTTCGCCTGCCTCATGTACTCGAAGCTCATC 5055 Query 230356 AACAAGCTACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTTGAAAACGAAAAG 230415 |||||||| || |||| || | | ||||| || || || || | ||| ||| Sbjct 5054 AACAAGCTCTCAAACGAGCGCATCCATGAGATCATCGGTGACGCCGTCGAGATCGAGAAG 4995 Query 230416 GAGTTCATTTGTGA--CGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGAACTTATG 230472 ||||| ||| || |||| || ||||| || || ||||||||| | || ||| Sbjct 4994 CAGTTCGTTTCCGAATCGCT---CCCTGTCGAACTCATCGGCATGAACTCGACGCTCATG 4938 Query 230473 GGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTG 230532 | || |||||||||||| ||||||||| || | || ||||| | || | Sbjct 4937 TGCCAATACATCGAATTCTGCGCCGACCGCCTTCTCAACGCCCTTGGCGCCACCAAGCTC 4878 Query 230533 TACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAAC 230592 | | || | |||||||| || | | ||||| | || || || || || ||||||||| Sbjct 4877 TTCCACGCCAAGAACCCATTCGACTGGATGGATATGATCTCCCTCCAGGGCAAGACCAAC 4818 Query 230593 TTCTTCGAAAAGCGTGTCAGTGACTA 230618 |||||||| ||||| ||| | || || Sbjct 4817 TTCTTCGAGAAGCGCGTCGGCGAGTA 4792 >seq1752 Length=1801 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 516 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 575 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 576 CCCACGGTGGGC 587 >seq1449 Length=1187 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 316 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 375 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 376 CCCACGGTGGGC 387 >seq2543 Length=13544 Score = 89.7 bits (98), Expect = 1e-12 Identities = 190/281 (68%), Gaps = 2/281 (1%) Strand=Plus/Minus Query 281732 GTTCAGTTTCGTGAAGATATACCTTGCACTCGCGTGGTCTTTACCACCCTGCAGCCTCGA 281791 || ||| | ||||||||| |||| | ||| ||| |||||| || ||||| || | || Sbjct 4851 GTGCAGGTGCGTGAAGATGTACCGCGGACTTGCGGCGTCTTTGCCGCCCTGTAGTCGCGT 4792 Query 281792 CCCAAACTGACCCTCCGGCAACAACCAGTTAATGTTATTGCTCCCGACGTAATCCTGAGC 281851 |||||||| ||| ||| |||| | ||| ||| || ||||| || || || Sbjct 4791 ACCAAACTGCCCCGACGGGTACAAGAGCGGGAGGTTGTTGGCGCCAACGTAGTCTTGGGC 4732 Query 281852 CAGGTTGACGATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGCGCTGTGTTCGGC 281911 || |||||||||||| | || | ||| | ||||||||||| || || | || ||||| Sbjct 4731 CATGTTGACGATTGTGCTGTGCAACGACGCTTCACCGTGGTGGTACGCCGTATGCTCGGC 4672 Query 281912 AACATAACCACTGAACTGTGCTACCTTCACGTCTGATGTCAAGTTGCGTTTGAA-AGCGC 281970 || || || ||| || || || || || || | || |||||||| ||| Sbjct 4671 GCAGTAGCCCGCGAGCTGCGCCACTTTGACCTCCTTCGTGAGCTTCCGTTTGAAGCACGC 4612 Query 281971 AATATAATACTTTTCGTTGAGAAGGCTTGAAACCATCAACG 282011 || | | ||||| | || || ||||||| || || ||| Sbjct 4611 AA-AGAGCACTTTCCTCTGGGACGGCTTGAGTCCGTCCACG 4572 >seq1761 Length=1389 Score = 84.2 bits (92), Expect = 5e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 165712 CCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCC 165770 ||||||||||||||||||||||||| || || |||| || ||||||||||||||||||| Sbjct 1 CCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCC 59 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057782499581060