Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achlya_20hypogyna_20[genbank_20GCA_5F002081595.1_202017-04-06] 3,062 sequences; 43,398,470 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq2528 295 7e-75 seq1051 168 7e-37 seq389 168 7e-37 seq880 159 4e-34 seq2606 145 8e-30 seq1567 143 3e-29 >seq2528 Length=14935 Score = 295 bits (326), Expect = 7e-75 Identities = 581/848 (69%), Gaps = 16/848 (2%) Strand=Plus/Minus Query 116591 GAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTAC 116650 ||||||||| ||| |||||| | ||||| || || | |||| ||||| |||||| Sbjct 5675 GAGAACCCCAACCGCTTCGTGCTCTTCCCGATCCAGCATGCGGATGTGTGGGAAATGTAC 5616 Query 116651 AAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCT-GTCCAAGGACACGAG 116709 || |||||||||||| |||||||| | ||| || | || || ||||| | | || Sbjct 5615 AAGAAGGCCGAGGCGAGCTTCTGGACAGCCGAAGAACTCGATCTCGTCCACGATCTGAAG 5556 Query 116710 CGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTT 116769 ||||||||| | | |||||||||||| ||||||| ||||||||| || || || Sbjct 5555 -GACTGGGAGAAGCTCACGGACAACGAGCGCTTCTTCATCACGCACGTGCTTGCGTTCTT 5497 Query 116770 CGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCA 116829 |||||| |||||||| || || ||||| ||| | | ||| | | || || || Sbjct 5496 CGCCGCGTCTGACGGCATTGTAAATGAGAACTTGGCCATGAACTTCTCCAACGAAGTTCA 5437 Query 116830 GGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGA 116889 |||| | || || || |||||||| |||||||||||||| || || ||| | ||||| || Sbjct 5436 GGTGCCTGAAGCTCGTTGCTTCTATGGCTTTCAGATCGCTATTGAAAACATCCACTCCGA 5377 Query 116890 AATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGTT 116949 | | || ||| || || ||||||||| | ||| |||||| ||| || | Sbjct 5376 AGTCTACTCGCTACTTATTGACACGTACATCAAGGACACGGTTGAGAAGGACCGCGTGCT 5317 Query 116950 GAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGAT 117009 ||||||||| ||||| ||||| ||| | |||||| |||||||||| ||| Sbjct 5316 CCGCGCCATCGACACGATCCCGTGTGTCCAGCGCAAGGCCCAGTGGGCGCTCAAGTGGTG 5257 Query 117010 CGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGT 117069 | | | | || || | || ||| ||| | || |||||||| || ||||| ||| | Sbjct 5256 CAACAACCAAATCGCTGCTTACGCCGAACGCATCGTTGCCTTCGCTGCTGTCGAAGGCAT 5197 Query 117070 CTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGG 117129 ||||| || ||| ||| | |||| || ||||||||||| ||||| |||||||| || Sbjct 5196 TTTCTTCTCTGGCTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCGGG 5137 Query 117130 CCTGA-CTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCT 117188 | ||| |||| | || ||||||||||| | ||||| || || || |||||||| |||| Sbjct 5136 CTTGAGCTTTTCG-AATGAGCTCATCTCGCGCGACGAAGGCCTTCACTGCGACTTCGCCT 5078 Query 117189 GTTTGCTGTTC---AAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCG 117245 | | ||| | |||| | ||| | | | | |||| || |||||| Sbjct 5077 GCCTCATGTACTCGAAGCTCATCAACAAGCTCTCAAAC---GAGCGCATCCATGAGATCA 5021 Query 117246 TCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGC 117305 || ||||| |||| |||||| ||| ||| | ||||| |||| || || || Sbjct 5020 TCGGTGACGCCGTCGAGATCGAGAAGCAGTTCGTTTCCGAATCGCTCCCTGTCGAACTCA 4961 Query 117306 TGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTG 117364 | || | || | ||| | |||| ||||||||||| ||| ||||||| | || || Sbjct 4960 TCGGCATGAACT-CGACGCTCATGTGCCAATACATCGAATTCTGCGCCGACCGCCTTCTC 4902 Query 117365 CTCGAGCTGGTCGGCGCCAAGCACTACAACACGCC--CAACCCGCTGGACTTTATGAACC 117422 || || | || | |||||| || | |||||| ||||| | |||| ||| | Sbjct 4901 AACGCCCTTGGCGCCACCAAGCTCTTC--CACGCCAAGAACCCATTCGACTGGATGGATA 4844 Query 117423 TCATCTCC 117430 | |||||| Sbjct 4843 TGATCTCC 4836 >seq1051 Length=134064 Score = 168 bits (186), Expect = 7e-37 Identities = 182/237 (77%), Gaps = 3/237 (1%) Strand=Plus/Plus Query 40683 CCGAAAA-ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCG 40741 |||||| |||||||| ||||| || ||||| |||||||| ||||||||| |||| |||| Sbjct 119722 CCGAAACCATGCAAATCTTCGTCAAGACGCTGACGGGCAAGACCATCACCCTCGATGTCG 119781 Query 40742 AAGCCACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCC 40800 | | | ||| | | | |||| | ||| | || || | ||||| |||||||| ||| Sbjct 119782 AGCCGTCGGACTCCATTGACAACG-TGAAGCAGAAGATCCAGGACAAGGAGGGCATTCCC 119840 Query 40801 GCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAAC 40860 |||| ||||| || ||||||| ||| ||||| ||||| || |||| ||||||||| Sbjct 119841 CCGGATCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCG 119900 Query 40861 GACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||||||||||| | ||||| || || ||| | ||| || | || ||| Sbjct 119901 GACTACAACATCCAGAAGGAGTCGACGCTCCACCTCGTGCTCCGCCTGCGCGGTGGC 119957 Score = 163 bits (180), Expect = 3e-35 Identities = 175/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| |||||||| ||||||||| |||| ||||| | | Sbjct 119958 ATGCAGATCTTCGTCAAGACGCTGACGGGCAAGACCATCACCCTCGATGTCGAGCCGTCG 120017 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | | |||| | ||| | || || | ||||| |||||||| ||| |||| || Sbjct 120018 GACTCCATTGACAACG-TGAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCGGATCA 120076 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| ||| ||||| ||||| || |||| ||||||||| |||||||| Sbjct 120077 GCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCGGACTACAA 120136 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| | ||||| || || ||| | ||| | | |||||| Sbjct 120137 CATCCAGAAGGAGTCGACGCTCCACCTCGTGCTCCGCCTCCGTGGCGGC 120185 >seq389 Length=167588 Score = 168 bits (186), Expect = 7e-37 Identities = 169/217 (78%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || |||||||| ||||| || ||||| |||||||||| | || Sbjct 110547 ATGCAAATCTTCGTCAAGACGCTCACCGGCAAGACGATCACGCTCGACGTCGAGCCGTCC 110488 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | || |||| ||||| | || || | ||||| |||||||| ||| ||||||| Sbjct 110487 GACTCGATTGACAACG-TCAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCA 110429 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| || ||||| ||||| || |||| ||||| || | ||||||||| Sbjct 110428 GCAGCGCCTCATCTTTGCCGGCAAGCAGCTTGAGGACGGCCGCACGCTGAGCGACTACAA 110369 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 ||||||||||||| | ||||| || || || ||||| Sbjct 110368 CATCCAGAAGGAGTCGACGCTCCACCTCGTCCTGCGC 110332 >seq880 Length=46309 Score = 159 bits (176), Expect = 4e-34 Identities = 176/232 (76%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | |||||||| |||||||| ||||||| || || | Sbjct 27234 ATGCAGATCTTCGTCAAGACCTTGACGGGCAAGACCATCACGCTCGACGTGGAGCCCTCG 27175 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | || |||| ||||| | || || | ||||| ||||| |||||| |||| || Sbjct 27174 GACTCGATTGACAACG-TCAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCGGATCA 27116 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| ||| ||||| ||||| || |||| ||||||||| |||||||| Sbjct 27115 GCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCGGACTACAA 27056 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGC 40920 ||||||||||||| | ||||| || || ||| | ||| || | || || ||| Sbjct 27055 CATCCAGAAGGAGTCGACGCTTCACCTTGTGCTCCGCCTGCGTGGTGGTGGC 27004 >seq2606 Length=15791 Score = 145 bits (160), Expect = 8e-30 Identities = 173/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | ||||| || |||||||| |||||||||| | | Sbjct 3370 ATGCAGATCTTCGTCAAGACTTTGACGGGTAAGACCATCACGCTCGACGTCGAGCCTTCG 3429 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| ||||| | || || | ||||| |||||||||||| |||| || Sbjct 3430 GACTCGATCGACAACG-TCAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGATCA 3488 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| ||| ||||| ||||| || |||| |||||||| |||||||| Sbjct 3489 GCAGCGCCTCATCTTCGCCGGCAAGCAGCTTGAGGACGGTCGCACCCTTTCGGACTACAA 3548 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGC 40920 ||||||||||||| | ||||| || || || | ||| || | || || ||| Sbjct 3549 CATCCAGAAGGAGTCGACGCTTCACCTTGTCCTTCGCCTGCGTGGTGGTGGC 3600 >seq1567 Length=70164 Score = 143 bits (158), Expect = 3e-29 Identities = 161/213 (76%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || | || ||||| |||||||| ||||||| || || Sbjct 50029 AATATGCAGATTTTCGTCAAGACTTTGACTGGCAAGACCATCACGCTCGACGTTGAGCCC 49970 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | ||| | | |||| ||||| | || || | ||||| |||||||||||| |||| Sbjct 49969 TCGGACTCGATCGACAACG-TCAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGA 49911 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||||| || ||||||| ||| ||||| ||||| || || | ||||| || | |||||| Sbjct 49910 TCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTGAGCGACTA 49851 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||||||| | ||||| || || || Sbjct 49850 CAACATCCAGAAGGAGTCGACGCTCCACCTTGT 49818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515199479985120