Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achlya_20hypogyna_20[genbank_20GCA_5F002081595.1_202017-04-06] 3,062 sequences; 43,398,470 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1567 143 2e-29 seq1051 123 2e-23 seq389 116 3e-21 seq2606 107 2e-18 seq880 102 7e-17 seq400 95.1 1e-14 >seq1567 Length=70164 Score = 143 bits (158), Expect = 2e-29 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || || |||||||| ||||||| ||||| |||||||||||| Sbjct 49823 GTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCATCCTCGAGCTG 49882 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || || ||| ||||||| ||||||||||| || || |||||||||||||| || || Sbjct 49883 CTTGCCGGCGAAGATGAGGCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTT 49942 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || || | |||| | ||||| | ||| || |||| || | || ||||| || Sbjct 49943 CTGCTTGACGTTGTCGATCGAGTCCGAGGGCTCAACGTCGAGCGTGATGGTCTTGCCAGT 50002 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 || ||| || || ||||||||||| Sbjct 50003 CAAAGTCTTGACGAAAATCTGCAT 50026 >seq1051 Length=134064 Score = 123 bits (136), Expect = 2e-23 Identities = 154/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||||| || ||||| || || |||||||| || | ||||| ||||| Sbjct 120167 CACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTC 120108 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||| || || ||| ||||||| ||||||||||| || || |||||||||||||| Sbjct 120107 GAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTG 120048 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || || | || | || ||||| |||||| |||| ||| | || || Sbjct 120047 GATCTTCTGCTTCACGTTGTCAATGGAGTCCGACGGCTCGACATCGAGGGTGATGGTCTT 119988 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||| ||||| || || || || ||||||||| Sbjct 119987 GCCCGTCAGCGTCTTGACGAAGATCTGCATG 119957 Score = 122 bits (134), Expect = 8e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||||| || ||||| || || |||||||| || | ||||| ||||| Sbjct 119939 CACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTC 119880 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||| || || ||| ||||||| ||||||||||| || || |||||||||||||| Sbjct 119879 GAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTG 119820 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || || | || | || ||||| |||||| |||| ||| | || || Sbjct 119819 GATCTTCTGCTTCACGTTGTCAATGGAGTCCGACGGCTCGACATCGAGGGTGATGGTCTT 119760 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATGGCTT 118743 ||| ||||| || || || || || ||||||| || Sbjct 119759 GCCCGTCAGCGTCTTGACGAAGATTTGCATGGTTT 119725 >seq389 Length=167588 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | | || || | ||||| || ||||| || || |||||||| |||||| Sbjct 110321 CCTCCACGAAGGCGCAGGACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 110380 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||| ||||| ||||| || || || ||||||| |||||||| || || || Sbjct 110381 AGCGTGCGGCCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCCGGGGGA 110440 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 |||||||||||||| || || || || || | || | | ||| | |||||| Sbjct 110441 ATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCAATCGAGTCGGACGGCTCGACG 110500 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 118740 |||| || | ||| |||||||| || || || || || || ||||||| Sbjct 110501 TCGAGCGTGATCGTCTTGCCGGTGAGCGTCTTGACGAAGATTTGCATGG 110549 >seq2606 Length=15791 Score = 107 bits (118), Expect = 2e-18 Identities = 143/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || |||||||| || | ||||| ||||| ||||| || || Sbjct 3566 GTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGACCGTCCTCAAGCTGCTTGCCG 3507 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| ||||||| ||||||||||| || || |||||||||||||| || || || || Sbjct 3506 GCGAAGATGAGGCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTG 3447 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| | ||||| |||||| |||| || | || || || |||| ||| Sbjct 3446 ACGTTGTCGATCGAGTCCGAAGGCTCGACGTCGAGCGTGATGGTCTTACCCGTCAAAGTC 3387 Query 118722 TTTACAAAAATCTGCATGG 118740 || || || |||||||||| Sbjct 3386 TTGACGAAGATCTGCATGG 3368 >seq880 Length=46309 Score = 102 bits (112), Expect = 7e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||| | || ||||| || || |||||||| || | ||||| ||||| Sbjct 27025 CACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTC 27084 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||| || || ||| ||||||| ||||||||||| || || || ||||||||||| Sbjct 27085 GAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCCGGGGGGATACCCTCCTTGTCCTG 27144 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || || | || | | ||||| | ||| || |||| || | || || Sbjct 27145 GATCTTCTGCTTGACGTTGTCAATCGAGTCCGAGGGCTCCACGTCGAGCGTGATGGTCTT 27204 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||| |||| || || || || ||||||||| Sbjct 27205 GCCCGTCAAGGTCTTGACGAAGATCTGCATG 27235 >seq400 Length=224259 Score = 95.1 bits (104), Expect = 1e-14 Identities = 113/151 (75%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 133214 GAGATACTGGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCT-GAGATATACATTCG 133272 ||| |||| |||||| | ||| ||||| || || ||||| | ||| || | || | Sbjct 137117 GAGGTACTTGTTGACGATCGTAAATTCGCCCGCAAGCACGCGCCGCGAG-TACATGTTGG 137059 Query 133273 ACGTGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCA 133332 ||||||| || |||| ||||||||||||||||| ||||| || |||| |||||||||| Sbjct 137058 ACGTGAATGGCTCGATGGATTCGTTGTTGCCGAGGATCTGGGCTGTCGATGCCGTGGGCA 136999 Query 133333 TGTACGCCACCAACAAAGAGTTTCTTACGCC 133363 | ||||| || | |||||| | ||||| Sbjct 136998 TCGGCGCCAGCAGTAGAGAGTTGCGCACGCC 136968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433814210262904