Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achlya_20hypogyna_20[genbank_20GCA_5F002081595.1_202017-04-06] 3,062 sequences; 43,398,470 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq389 125 8e-24 seq1051 120 3e-22 seq1214 87.8 2e-12 seq2647 86.0 7e-12 >seq389 Length=167588 Score = 125 bits (138), Expect = 8e-24 Identities = 145/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || ||| || || |||| || |||||||| || || || Sbjct 110356 CTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCAAGCTGCTTGCCGGCAAA 110415 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | || | || |||||||||| ||| || || |||| ||| Sbjct 110416 GATGAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCTGCTTGA-CGT 110474 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | || |||| || || || |||| |||||| || ||||| || |||||||| | Sbjct 110475 TGTCAATCGAGTCGGACGGCTCGACGTCGAGCGTGATCGTCTTGCCGGTGAGCGTCTTGA 110534 Query 43171 CAAAGATTTGCAT 43183 | ||||||||||| Sbjct 110535 CGAAGATTTGCAT 110547 >seq1051 Length=134064 Score = 120 bits (132), Expect = 3e-22 Identities = 144/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | || || || |||| || |||||||| || ||||| Sbjct 119921 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 119862 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| |||||||| || | || | || |||||||||| ||| || || || | ||| Sbjct 119861 GATGAGGCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGT 119803 Query 43112 CGCCACCGT-GTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | || | ||| || || ||||||| |||||||| |||||||| |||||||| | Sbjct 119802 TGTCAATGGAGTCCGACGGCTCGACATCGAGGGTGATGGTCTTGCCCGTCAGCGTCTTGA 119743 Query 43171 CAAAGATTTGCAT 43183 | ||||||||||| Sbjct 119742 CGAAGATTTGCAT 119730 >seq1214 Length=1413 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| |||| |||||||||||||||| ||||| |||||| Sbjct 1017 TCTCCCCGTCCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCGGGTATACTAACCACT 1076 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 1077 ATACTAACGAGGA 1089 >seq2647 Length=4394 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| |||| |||||||||||||||| ||||| ||||||| Sbjct 2458 CTCCCCGTCCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCGGGTATACTAACCACTA 2399 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 2398 TACTAACGAGGA 2387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571795713681360