Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achlya_20hypogyna_20[genbank_20GCA_5F002081595.1_202017-04-06] 3,062 sequences; 43,398,470 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq400 219 9e-52 seq2528 84.2 5e-11 >seq400 Length=224259 Score = 219 bits (242), Expect = 9e-52 Identities = 624/937 (67%), Gaps = 34/937 (4%) Strand=Plus/Plus Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868 || || |||||||| | ||||| ||||| ||||| || || ||||| || | Sbjct 135615 GACTTTGAGTACGACTACTTTGGCTTCAAGACGCTCGAAAAGAGCTATCTTCTGCGTGTC 135674 Query 248869 GATGGCAAGATCGTG-GAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCA 248927 ||| |||| | ||| ||||| ||||| ||| | ||||| || |||||||| || || Sbjct 135675 AATGACAAGGT-GTGCGAACGCCCGCAGCATATGATCATGCGTGTTGCTGTCGGTATCCA 135733 Query 248928 CAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGA--TG 248985 |||||| ||||| ||| | |||| | |||||| |||||| | | || | | Sbjct 135734 CAAGGAGGACATTGAGGCGGCGCTCAACACGTACGAGTACATGAGTCA--GTTGTACTTC 135791 Query 248986 ACACATGCCACACCGACGCTCTTCAACGCCGGTAC-CGTCAACAATCAGCTGAGCTCGTG 249044 || || || || || || ||||||||||||||||| | || | | ||||| ||||| Sbjct 135792 ACGCACGCGACGCCTACTCTCTTCAACGCCGGTACGCCTCGTCCA-CAGCTCTCGTCGTG 135850 Query 249045 CTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGAC 249104 ||| ||||| ||||||| |||||||| | || |||||||| || ||||| || ||| Sbjct 135851 CTTCCTTCTCGCCATGCGCGACGACTCAATTGAGGGCATTTACGATACGCTGAAGCAGTG 135910 Query 249105 GGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAA 249164 || ||||| || | || || || || ||| || | | |||||| || ||| Sbjct 135911 CGCCTGCATTTCCAAGTGGGCCGGTGGCATTGGTGTCAACATTCACAACATTCGTTCGAC 135970 Query 249165 GGGTTCGTACATCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATG 249224 ||||| || || || || | | | |||||| | ||| | ||||| Sbjct 135971 CAACAGCTACATTCGTGGCACGAACGGCTCCTCTAACGGTATCATTCCCATGCTTCGCGT 136030 Query 249225 CTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCG---CCGAAAGGGGTCGTTCGC 249281 || | || || | | | | |||| | ||| | || ||||| || || || Sbjct 136031 GTTCAACGATACAGCGCGTTACGTGGACCAAGGCGGTGGTAAGCGGAAGGGCTCTTTTGC 136090 Query 249282 CATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAA 249341 |||||| | || ||||||||| ||||| || |||||||| ||| | || |||||| | Sbjct 136091 CATGTACCTTGAGCCGTGGCACGCGGATATTTTCGAGTTCCTTGACCTCAAGAAGAACCA 136150 Query 249342 CGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTT 249401 ||||||||| || | ||||| ||||||||||| | | ||||| || |||| |||| Sbjct 136151 CGGCAACGAACTGCACCGCGCGCGCGACCTCTTCTATGCCATGTGGATCCCCGATCTGTT 136210 Query 249402 CATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGACGCCCCGGA 249461 |||| |||||| || || |||| || |||| || ||| ||| ||| ||||| | Sbjct 136211 CATGAAGCGCGTCGAGTCCAACGGGGAGTGGAGCCTCTTTTGCCCGAACGAAGCCCCTGG 136270 Query 249462 CCTCATCGATCTAC-ACGGCGCCGACTTCGACCAAGC-CTATAAG--AAATACGAATCCA 249517 ||| ||| || | |||||||| |||| |||| || || | || ||||| | Sbjct 136271 TCTCGCCGA-CTGCTGGGGCGCCGAGTTCG---AAGCGCTGTACGCCAAGTACGAGGCAG 136326 Query 249518 ACGGCATCG---GCAAGACAATCAAGGCTCGGACCCT---TTTTGCGAAGGTGGTGGAGT 249571 | || || ||||| |||||||| | || ||||||| || | || | Sbjct 136327 AGGGTCGCGCTCGCAAGGTCATCAAGGCCCAACAGCTGTGGTTTGCGA---TGCTCGATT 136383 Query 249572 CCCAGATAGAGACAGGGGGGCCGTATTATTTGTTCAAAGACGCGTGCAACGCCAAGAGTA 249631 | ||||| ||||| || ||| || | | ||| ||||||||||| ||||| | Sbjct 136384 CGCAGATCGAGACTGGCACGCCCTACATGCTTTACAAGGACGCGTGCAATTCCAAGTCGA 136443 Query 249632 ACCAACGGCATCTTGGTACCATC-CGCTC-GTCAAATCTCTG-TGCAGAGGTGATTCAAT 249688 |||| | | | |||||||| ||| | | || || || || ||| || || || | | Sbjct 136444 ACCAGCAGAACCTTGGTACGATCAAGAGCAGT--AACCTTTGCTGC-GAAGTCATCGAGT 136500 Query 249689 ACTCGTCCAAGGAGGAGATTGCCGTCTGCAACCTGGC 249725 || || |||||| ||| | || || |||||||| || Sbjct 136501 ACACGAGCAAGGACGAGGTCGCTGTGTGCAACCTCGC 136537 Score = 102 bits (112), Expect = 2e-16 Identities = 178/254 (70%), Gaps = 4/254 (2%) Strand=Plus/Plus Query 248418 CATGTACATCACCAAGCGGGACGGGCGCAAAGAAAACGTTCTCTTCGACAAAATCTCGGC 248477 ||||||| | ||||||||||| |||| ||| | || |||||||| ||| |||| Sbjct 135197 CATGTACGTGGTGAAGCGGGACGGACGCAGCGAAGAGGTCAAGTTCGACAAGATCACGGC 135256 Query 248478 GCGCATCAAGAAGCTCTGTTATGGTCTGGAACCCAACTTCGTCGATCATGTGGCCATCGC 248537 ||||||||| |||||||| ||||| || || || || |||| | | | || || Sbjct 135257 GCGCATCAACAAGCTCTGCTATGGCCTCGACCCGGCCTACGTCAACCCGATCCTGATTGC 135316 Query 248538 CCAGAAAGTTATTTCGGGCGTCTACACCGGAGTAACAACGACAGAACTGGA-CACCTTAG 248596 |||||||| | |||| || ||| | || || || ||| | ||||| || | ||| | Sbjct 135317 GCAGAAAGTCGTCGCGGGGGTGTACGCGGGCGTGACGACGTCCGAACTCGATGAACTT-G 135375 Query 248597 CTGCGGAGACGGCGGCGTACATGGCGATTGCA-CACCCCGACTACTCGCTGCTGGCCGGG 248655 | || ||||| ||||| ||| ||||| ||| || || |||| ||| |||||| | | Sbjct 135376 CGGCCGAGACAGCGGCATACCAGGCGA-CGCAGCATCCTGACTTCTCCAAGCTGGCAGCG 135434 Query 248656 AGGATCGCCGTCTC 248669 | ||| | |||| Sbjct 135435 CGCATCTCGATCTC 135448 >seq2528 Length=14935 Score = 84.2 bits (92), Expect = 5e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 157244 ACCCCGGGCTTGCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGA 157303 || || | |||| ||||||| | || | ||||| || ||||||||||| |||||||| Sbjct 4777 ACGCCCGACTTGGAGTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGG 4836 Query 157304 GAAATCATGTCCATCCACTCGAATGGGTT 157332 || ||||| |||||||| ||||||||||| Sbjct 4837 GAGATCATATCCATCCAGTCGAATGGGTT 4865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073724274130816