Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achlya_20hypogyna_20[genbank_20GCA_5F002081595.1_202017-04-06] 3,062 sequences; 43,398,470 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1051 104 2e-17 seq389 104 2e-17 seq880 98.7 8e-16 seq2606 95.1 1e-14 seq1567 93.3 3e-14 >seq1051 Length=134064 Score = 104 bits (114), Expect = 2e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| ||||| ||||||||| ||||||||||| || ||| |||| || || || Sbjct 119933 GTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTG 119874 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || |||||||| || | ||||| || || || || | |||||||||||| || || Sbjct 119873 CTTGCCGGCGAAGATGAGGCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATCTT 119814 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||||| || | | | |||| ||| || || | ||| || ||||||||||| Sbjct 119813 CTGCTTCACGTTGTCAATGGAGTCCGACGGCTCGACATCGAGGGTGATGGTCTTGCCCGT 119754 Query 45313 CAGAGTCTTCACAAAGATTTGCATG 45337 ||| ||||| || |||||||||||| Sbjct 119753 CAGCGTCTTGACGAAGATTTGCATG 119729 Score = 100 bits (110), Expect = 2e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| ||||| ||||||||| ||||||||||| || ||| |||| || || || Sbjct 120161 GTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTG 120102 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || |||||||| || | ||||| || || || || | |||||||||||| || || Sbjct 120101 CTTGCCGGCGAAGATGAGGCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATCTT 120042 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||||| || | | | |||| ||| || || | ||| || ||||||||||| Sbjct 120041 CTGCTTCACGTTGTCAATGGAGTCCGACGGCTCGACATCGAGGGTGATGGTCTTGCCCGT 119982 Query 45313 CAGAGTCTTCACAAAGATTTGCATG 45337 ||| ||||| || ||||| |||||| Sbjct 119981 CAGCGTCTTGACGAAGATCTGCATG 119957 >seq389 Length=167588 Score = 104 bits (114), Expect = 2e-17 Identities = 148/206 (72%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| ||||| ||||||||| |||||||||||| |||| ||| |||| || || || Sbjct 110344 GTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCAAGCTG 110403 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || ||||| || || | ||||| ||||| || || | |||||||||||| || || Sbjct 110404 CTTGCCGGCAAAGATGAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTT 110463 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACC-CTCCACCTCCACGGTAATCGTCTTGCCCG 45311 ||||| || | | || | | || ||| || || | || ||||||||||| | Sbjct 110464 CTGCTTGAC-GTTGTCAATCGAGTCGGACGGCTCGACGTCGAGCGTGATCGTCTTGCCGG 110522 Query 45312 TCAGAGTCTTCACAAAGATTTGCATG 45337 | || ||||| || |||||||||||| Sbjct 110523 TGAGCGTCTTGACGAAGATTTGCATG 110548 >seq880 Length=46309 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/206 (71%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| ||||| ||||||||| ||||||||||| || ||| |||| || || || Sbjct 27031 GTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTG 27090 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || |||||||| || | ||||| || || || || | ||||||||||||| || || Sbjct 27091 CTTGCCGGCGAAGATGAGGCGCTGCTGATCCGGGGGGATACCCTCCTTGTCCTGGATCTT 27150 Query 45253 TTGCTTAACCGCCGCCACGC-TGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCG 45311 ||||| | || | || | |||| |||||| || | || || |||||||||| Sbjct 27151 CTGCTTGA-CGTTGTCAATCGAGTCCGAGGGCTCCACGTCGAGCGTGATGGTCTTGCCCG 27209 Query 45312 TCAGAGTCTTCACAAAGATTTGCATG 45337 ||| ||||| || ||||| |||||| Sbjct 27210 TCAAGGTCTTGACGAAGATCTGCATG 27235 >seq2606 Length=15791 Score = 95.1 bits (104), Expect = 1e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| ||||| ||||||||| ||||||||||| || |||| |||| || || || Sbjct 3573 GTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGACCGTCCTCAAGCTG 3514 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || |||||||| || | ||||| || || || || | |||||||||||| || || Sbjct 3513 CTTGCCGGCGAAGATGAGGCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTT 3454 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||||| || | | |||| | ||| || || | || || ||||| ||||| Sbjct 3453 CTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCGACGTCGAGCGTGATGGTCTTACCCGT 3394 Query 45313 CAGAGTCTTCACAAAGATTTGCATG 45337 || |||||| || ||||| |||||| Sbjct 3393 CAAAGTCTTGACGAAGATCTGCATG 3369 >seq1567 Length=70164 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| ||||| ||||||||| |||||||||||| |||| ||| | || || || || Sbjct 49823 GTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCATCCTCGAGCTG 49882 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || |||||||| || | ||||| || || || || | |||||||||||| || || Sbjct 49883 CTTGCCGGCGAAGATGAGGCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTT 49942 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||||| || | | |||| ||| || || | || || |||||||| || Sbjct 49943 CTGCTTGACGTTGTCGATCGAGTCCGAGGGCTCAACGTCGAGCGTGATGGTCTTGCCAGT 50002 Query 45313 CAGAGTCTTCACAAAGATTTGCATGTTGC 45341 || |||||| || || || ||||| |||| Sbjct 50003 CAAAGTCTTGACGAAAATCTGCATATTGC 50031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395060456534302