Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achlya_20hypogyna_20[genbank_20GCA_5F002081595.1_202017-04-06] 3,062 sequences; 43,398,470 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq400 365 4e-96 seq2528 187 2e-42 seq389 127 2e-24 >seq400 Length=224259 Score = 365 bits (404), Expect = 4e-96 Identities = 943/1418 (67%), Gaps = 46/1418 (3%) Strand=Plus/Minus Query 22465 AAACTCGCCGGACAAG-ACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATT 22523 ||| ||||| | |||| ||||| || ||| |||||||| ||||| || |||| |||| Sbjct 137096 AAATTCGCCCG-CAAGCACGCGCCGCGAGTACATGTTGGACGTGAATGGCTCGATGGATT 137038 Query 22524 CATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGT 22583 | ||||| || || ||||| || ||||| || || ||||||||||||| |||||| |||| Sbjct 137037 CGTTGTTGCCGAGGATCTGGGCTGTCGATGCCGTGGGCATCGGCGCCAGCAGTAGAGAGT 136978 Query 22584 TTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACG 22643 | | || ||| || | | | ||||||| ||| ||||||||| ||||| | || Sbjct 136977 TGCGCACGCCATGAGCAGCCACCTGCGCCTTGAGCGTCGCCCAGTCCCAGAGATCAGTCG 136918 Query 22644 GCGTCACATTGTCCCACATATCGTATTGCAACACGCC--GCGACTCGCCGGGCTGCCTTC 22701 |||||||| ||||||| ||||| || || ||| | || | ||||| || Sbjct 136917 GCGTCACAC---CCCACATGTCGTACTGGAAGCGGCCCTGGGA---GACGGGCGACCCGG 136864 Query 22702 -GTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTC-GCCTCCAACGCGCCG 22759 |||||| ||||| || || | ||| || || || | | ||||| | | || Sbjct 136863 AGTACGTCTCGTAGGGGCCGAGCTGCTTGGCGAGCTC-CATCGAAGTCTCCATAGAGGCG 136805 Query 22760 TAATATATAGTCTCGAAGATTTTCTTGTTCAA-TTC--GGCGGCGG-CGACGCTTTCGTA 22815 | || || ||||| ||||| | |||| | ||| ||| ||| |||| ||| | Sbjct 136804 TGGTAGATCGTCTCAAAGATCTGGATGTTGAGCTTCTTGGCCTCGGGCGAC----TCGAA 136749 Query 22816 CGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCG 22875 ||| | ||| | | ||| || ||||| | ||||| || || || |||| || || Sbjct 136748 CGGGTAGCCCATGAGGATGAAGGCATCCGCGAGGCCCTGGACACCGATGCCGACGGGGCG 136689 Query 22876 GTTTTTCAGATTCGACACTTTTGC----CTCGGGCAAAGGATACCAATTCGAATCGATTG 22931 || || || || |||| ||| | || || | || || || Sbjct 136688 GTGGCGCATGTTG----CTGTTGCGCGCCTCCTCGATCGGGTAGTAGTTGACGTCAATCA 136633 Query 22932 TTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAA 22991 |||||||||| | ||| || || || || | | ||||||| | | Sbjct 136632 CCTTGTTCAAGTTGCGGGTGACGATCTTGGTGACCTTGTGGAGGTTCTTAAAGTCGAAGA 136573 Query 22992 CGCCCGATTGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCT 23051 | || | ||| ||||||||| || || || || || || ||||| || || |||| Sbjct 136572 CACC-GTCAGTA--ACAAACTTGGAGAGCGCAATGGACGCGAGGTTGCACACAGCGACCT 136516 Query 23052 CGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCA 23111 |||| ||| ||||||||| | | |||| || || || || | ||| ||||| || | Sbjct 136515 CGTCCTTGCTCGTGTACTCGATGACTTCGCAGCAAAGGTTACTGCTCTTGATCGTACCAA 136456 Query 23112 AATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCG 23171 || |||||| || |||||||| |||||||| |||||||| |||||||| | Sbjct 136455 GGTTCTGCTGGTTCGACTTGGAATTGCACGCGTCCTTGTAAAGCATGTAGGGCGTGCCAG 136396 Query 23172 TCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGT-GAACACGTCGCACG 23230 |||||| |||||| |||| ||||| ||||| || || | || || | || | Sbjct 136395 TCTCGATCTGCGAATCGAGCATCGCAAACCACAGCTGTTGGGCCTTGATGACCTTGCGAG 136336 Query 23231 TACCTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCG 23290 | ||| || |||||||||| ||||| ||| || || ||||| || | |||||| Sbjct 136335 CGCGACCCT-CTGCCTCGTACTTGGCGTACAGCGCTTCGAACTCGGCGCCCCAGCAGTCG 136277 Query 23291 GCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGT 23350 || || || || | || |||| || | ||| |||||| || || ||||| Sbjct 136276 GCGAGACCAGGGGCTTCGTTCGGGCAAAAGAGGCTCCACTCCCCGTTGGACTCGACGCGC 136217 Query 23351 CTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCT 23410 |||| || ||||| || ||||| | || ||||| || ||||| ||||| | || Sbjct 136216 TTCATGAACAGATCGGGGATCCACATGGCATAGAAGAGGTCGCGCGCGCGGTGCAGTTCG 136157 Query 23411 TTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGG 23470 |||||| |||||| || | || | || || || | ||||| ||||||||||| ||| Sbjct 136156 TTGCCGTGGTTCTTCTTGAGGTCAAGGAACTCGAAAATATCCGCGTGCCACGGCTCAAGG 136097 Query 23471 TAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTG 23530 || | |||||| | |||| | |||| ||||| || || |||||||| || || | | Sbjct 136096 TACATGGCAAAAGAGCCCTTCCGCTTACCACCGCCTTGGTCCACGTAACGCGCTGTATCG 136037 Query 23531 TTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTC 23590 ||| |||| | ||||| || | || |||||| || | |||| | || ||||| Sbjct 136036 TTGAACACGCGAAGCATGGGAATGATACCGTTAGAGGAGCCG--TTCG--TGCCACGAAT 135981 Query 23591 GAACCTTTTGCTCGAAC----GTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGA 23646 | | || ||| |||||| |||||||| || || ||| ||||| ||| || | || || Sbjct 135980 GTAGCTGTTGGTCGAACGAATGTTGTGAATGTTGACACCAATGCCACCGGCCCACTTGGA 135921 Query 23647 TATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGC 23706 || ||||| || ||||| || ||||| |||||||| || ||| || | || Sbjct 135920 AATGCAGGCGCACTGCTTCAGCGTATCGTAAATGCCCTCAATTGAGTCGTCGCGCATGGC 135861 Query 23707 GACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCT 23766 || | ||| ||||| || | || | |||||| |||| ||| || || || | Sbjct 135860 GAGAAGGAAGCACGACGAGAGCTGTGGACGAGGCGTACCGGCGTTGAAGAGAGTAGGCGT 135801 Query 23767 GGCGTGCGTAAAGTATCCATTCGA--CATTAGATTGTACGTGTCGATGGCGGCATCAATG 23824 |||||||| ||||| || || ||| | |||||||| || || || |||||| Sbjct 135800 CGCGTGCGTGAAGTA--CAACTGACTCATGTACTCGTACGTGTTGAGCGCCGCCTCAATG 135743 Query 23825 TCCTCTCCGTGTATACCGATGGCGACGCGCATCATCAT 23862 ||||| ||| ||||||| || || ||||| ||||| Sbjct 135742 TCCTCCTTGTGGATACCGACAGCAACACGCATGATCAT 135705 >seq2528 Length=14935 Score = 187 bits (206), Expect = 2e-42 Identities = 547/831 (66%), Gaps = 20/831 (2%) Strand=Plus/Minus Query 57573 TGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCT-GTC 57631 ||| | |||||||| ||||| || || || ||||| | ||||||| | || || ||| Sbjct 5627 TGGGAAATGTACAAGAAGGCCGAGGCGAGCTTCTGGACAGCCGAAGAACTCGATCTCGTC 5568 Query 57632 TAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGT 57691 | | |||||| || ||||| |||| || ||| | || || | ||||| Sbjct 5567 CACG-ATCTGAAGGACTGGGAGAAGCTCACGGACAACGAGCGCTTCTTCATCACGCACGT 5509 Query 57692 GTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTC 57751 | | ||||| |||||||| || || || ||||| || ||||| |||| | | || || Sbjct 5508 GCTTGCGTTCTTCGCCGCGTCTGACGGCATTGTAAATGAGAACTTGGCCATGAACTTCTC 5449 Query 57752 ACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAA 57811 | ||||| || ||| | || || | ||||| || || ||||| | || |||||||| Sbjct 5448 CAACGAAGTTCAGGTGCCTGAAGCTCGTTGCTTCTATGGCTTTCAGATCGCTATTGAAAA 5389 Query 57812 CGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAA 57871 | | || || ||| | || |||||||| || || |||||| | ||||||| | ||||| Sbjct 5388 CATCCACTCCGAAGTCTACTCGCTACTTATTGACACGTACATCAAGGACACGGTTGAGAA 5329 Query 57872 ACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAG--AAGGCAGAGTGG 57929 | || || ||| ||||| || || |||| | | ||| ||||| ||||| Sbjct 5328 GGACCGCGTGCTCCGCGCCATCGACACGAT-CCCGTG-TGTCCAGCGCAAGGCCCAGTGG 5271 Query 57930 TCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCC 57989 | |||| ||| || | | | || | | |||||| | | | || ||||| Sbjct 5270 GCGCTCAAGTGGTGCAACAACCAAATCGCTGCTTACGCCGAACGCATCGTTGCCTTCGCT 5211 Query 57990 GCCGTCGAAGGTATATTCTTTTCGGGCAGCTT-TGCGGCAATATTTTGGATGAAGAAACG 58048 || |||||||| || ||||| || ||| ||| ||| || | || ||| | ||||| || Sbjct 5210 GCTGTCGAAGGCATTTTCTTCTCTGGCTCCTTCTGCTCCA-TCTTCTGGCTCAAGAAGCG 5152 Query 58049 CGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCA 58108 ||| || ||||| ||| ||| ||| || ||| | || ||||||||||| || || || Sbjct 5151 CGGTCTCATGCCGGGCTTGAGCTTTTCGAATGAGCTCATCTCGCGCGACGAAGGCCTTCA 5092 Query 58109 TACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCGGGATCGCAT 58168 || || || ||||| |||||||| | | |||| || | | || ||||| Sbjct 5091 CTGCGACTTCGCCTGCCTCATGTACTCGAAGCTCATCAACAAGCTCTCAAACGAGCGCAT 5032 Query 58169 CTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACC 58228 | || || ||| || || |||| |||||| || |||| || ||||| | || || Sbjct 5031 CCATGAGATCATCGGTGACGCCGTCGAGATCGAGAAGCAGTTCGTTTCCGAATCGCTCCC 4972 Query 58229 GGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGA 58288 || | | |||| |||||| | |||| | ||||| || || ||||| Sbjct 4971 TGTCGAACTCATCGGCATGAACTCGACGCTCATGTGCCAATACATCGAATTCTGCGCCGA 4912 Query 58289 CAGACTTTTGCTCGAACTGATTGGAG------AGCGTCATTACAACACGAAAAATCCGTT 58342 | | ||| ||| | |||| | ||| || | | || | || || || || Sbjct 4911 CCGCCTT---CTCAACGCCCTTGGCGCCACCAAGC-TC--TTCCACGCCAAGAACCCATT 4858 Query 58343 TGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGAAAA 58393 || | ||| || ||||||| ||| |||||||||| ||||| ||||| || Sbjct 4857 CGACTGGATGGATATGATCTCCCTCCAGGGCAAGACCAACTTCTTCGAGAA 4807 >seq389 Length=167588 Score = 127 bits (140), Expect = 2e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||| ||||| || || ||||| |||||||| ||||||| || ||||| Sbjct 110548 CATGCAAATCTTCGTCAAGACGCTCACCGGCAAGACGATCACGCTCGACGTCGAGCCGTC 110489 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| |||| || ||||||||| ||| | || || ||||| Sbjct 110488 CGACTCGATTGACAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCA 110429 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || || || ||||| ||| | || ||| || ||||||| || || Sbjct 110428 GCAGCGCCTCATCTTTGCCGGCAAGCAGCTTGAGGACGGCCGCACGCTGAGCGACTACAA 110369 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || ||||| || || || || || Sbjct 110368 CATCCAGAAGGAGTCGACGCTCCACCTCGTCCT 110336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445749338291040