Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achlya_20hypogyna_20[genbank_20GCA_5F002081595.1_202017-04-06] 3,062 sequences; 43,398,470 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq2528 141 1e-28 >seq2528 Length=14935 Score = 141 bits (156), Expect = 1e-28 Identities = 564/867 (65%), Gaps = 48/867 (6%) Strand=Plus/Minus Query 125022 TGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCT-GTC 125080 |||||||||||||| ||||| |||| ||| ||||| | |||||| ||||||| ||| Sbjct 5627 TGGGAAATGTACAAGAAGGCCGAGGCGAGCTTCTGGACAGCCGAAGAACTCGATCTCGTC 5568 Query 125081 CAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCA 125140 || | | ||| | || ||||||| | | || || | ||||| || || |||| Sbjct 5567 CACG-ATCTGAAGGACTGGGAGAAGC---TCACGGACAACGAGCGCTTCTTCATCACGCA 5512 Query 125141 CATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA-- 125198 | | | || ||||| |||| || || || || || || || || || | || || Sbjct 5511 CGTGCTTGCGTTCTTCGCCGCGTCTGACGGCATTGTAAATGAGAACTTG--GCCATGAAC 5454 Query 125199 TTCTCTCAAGA-GTTGACCATTCCAGAGGTGTCGT-GCTTTTACGGATTCCAAATCATGA 125256 ||||| | || ||| | | || || | |||| |||| || || || || ||| | Sbjct 5453 TTCTCCAACGAAGTTCAGG-TGCCTGAAGC-TCGTTGCTTCTATGGCTTTCAGATCGCTA 5396 Query 125257 TTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGC 125316 |||| ||| | ||||| ||| | ||||| ||| ||||||| |||||| || || Sbjct 5395 TTGAAAACATCCACTCCGAAGTCTACTCGCTACTTATTGACACGTACATCAAGGACACGG 5336 Query 125317 -----AACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAA 125371 || | | | | ||||| ||| ||||||||| | |||| | | | || Sbjct 5335 TTGAGAAGG--ACCGCGTGCTCCG---CGCCATCGACACGATCCCGTGTGTCCAGCGCAA 5281 Query 125372 GGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGT 125431 ||| || |||| | | |||| | | || | | || | |||||||| | | || Sbjct 5280 GGCCCAGTGGGCGCTCAAGTGGTGCAACAACCAAATCGCTGCTTACGCCGAACGCATCGT 5221 Query 125432 GGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-TAGTTTTGCGGCCATCTTTTGGC 125490 || ||||| || || || ||||| ||||| || || | || ||| ||||||| |||| Sbjct 5220 TGCCTTCGCTGCTGTCGAAGGCATTTTCTTCTCTGGCTCCTTCTGCT-CCATCTTCTGGC 5162 Query 125491 TCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACG 125550 ||||||||||||| |||||||| || ||| || ||| | || || || |||| Sbjct 5161 TCAAGAAGCGCGGTCTCATGCCGGGCTTGAGCTTTTCGAATGAGCTCATCTCGCGCGACG 5102 Query 125551 AGGGCCTACACTGTGACTTTGCCATTCTACTGT-TTCGCAACT-ATCTGC---GTCCCGA 125605 | ||||| ||||| ||||| ||| || ||| ||| | || ||| | || | | Sbjct 5101 AAGGCCTTCACTGCGACTTCGCCTGCCTCATGTACTCGAAGCTCATCAACAAGCTCTCAA 5042 Query 125606 --GTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAA 125663 | || |||| ||| || ||||| || || ||||| ||| || Sbjct 5041 ACGAGCGCATCC----ATG---AGATCATC-----GGT----GACGCCGTCGAGATCGAG 4998 Query 125664 CAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATG 125723 | |||| | ||||||| || || ||| | || |||||||||| | ||| ||| Sbjct 4997 AAGCAGTTCGTTTCCGAATCGCTCCCTGTCGAACTCATCGGCATGAACTCGACGCTCATG 4938 Query 125724 TGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCGCAAGATT 125783 ||| | ||||| || || || || || || || ||| | | | |||| | Sbjct 4937 TGCCAATACATCGAATTCTGCGCCGACCGCCTTCTCAACGCCCTTGGCGCCACCAAGCTC 4878 Query 125784 TACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAAC 125843 | | |||||||||| || || || | ||| | || || || |||| ||||||||| Sbjct 4877 TTCCACGCCAAGAACCCATTCGACTGGATGGATATGATCTCCCTCCAGGGCAAGACCAAC 4818 Query 125844 TTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 || ||||||||| ||| |||||||| Sbjct 4817 TTCTTCGAGAAGCGCGTCGGCGAGTAC 4791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741030835959120