Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achlya_20hypogyna_20[genbank_20GCA_5F002081595.1_202017-04-06] 3,062 sequences; 43,398,470 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq513 167 4e-37 seq1420 145 1e-30 seq876 145 1e-30 seq1341 136 6e-28 seq915 127 3e-25 >seq513 Length=33096 Score = 167 bits (184), Expect = 4e-37 Identities = 200/269 (74%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | || ||||| || |||||||| || ||||||||||| || | Sbjct 2590 CGCCAAGCGCCACCGCAAGGTC-CTTCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 2648 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| |||||||||||||| ||||| |||||||| |||| || | |||| || |||| Sbjct 2649 TCCGCCGTCTGGCTCGTCGCGGTGGTGTCAAGCGCATCTCCGGTCTCATCTACGAGGAGA 2708 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||| | ||| | ||| ||||||| ||| ||| || | || || || ||| || | Sbjct 2709 CTCGCGGTGTCCTCAAGGTCTTCCTTGAGAACGTCATTAAGGACTCTGTCACCTACACTG 2768 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || ||||| || || |||||||| |||| || || | || ||||| | Sbjct 2769 AGCACGCCCGCCGCAAGACGGTGACGGCCATGGATGTCGTGTACGCCCTTAAGCGTCAGG 2828 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | |||||||||| || ||||| Sbjct 2829 GCCGCACTCTTTATGGTTTCGGCGGTTAA 2857 >seq1420 Length=79267 Score = 145 bits (160), Expect = 1e-30 Identities = 180/244 (74%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || || | | || ||||| || |||||||| || ||||||||||| |||| Sbjct 37182 CGCCAAGCGCCACCGTAAGGTC-CTTCGCGACAACATCCAGGGCATCACCAAGCCCGCTA 37124 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||||||||||| ||||| || ||||||||| |||| || | |||| || |||| Sbjct 37123 TCCGCCGTCTGGCTCGCCGTGGCGGCGTCAAGCGTATCTCGGGCCTCATCTACGAGGAGA 37064 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| | ||| ||||||| ||| ||| ||| | || || || || || | Sbjct 37063 CCCGCGGTGTCCTCAAGGTCTTCCTTGAGAACGTCATCAAGGACTCTGTCACGTACACTG 37004 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 |||||||| || ||||| || || | ||||| ||||||| || | || || || | Sbjct 37003 AGCACGCTCGCCGCAAGACGGTGACTGCTATGGACGTCGTCTACGCTCTCAAGCGCCAGG 36944 Query 16671 GCCG 16674 |||| Sbjct 36943 GCCG 36940 >seq876 Length=132673 Score = 145 bits (160), Expect = 1e-30 Identities = 195/269 (72%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | || ||||| || |||||||| || ||||||||||| || | Sbjct 25099 CGCCAAGCGCCACCGCAAGGTC-CTTCGTGACAACATCCAGGGCATCACCAAGCCCGCCA 25157 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||||||||||||||| ||||| || ||||||||| |||| || | |||| || || | Sbjct 25158 TCCGTCGTCTGGCTCGCCGTGGCGGTGTCAAGCGTATCTCGGGCCTCATCTACGAGGAAA 25217 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| | ||| ||||||| ||| ||| ||| | || | || || || | Sbjct 25218 CCCGCGGTGTCCTCAAGGTCTTCCTTGAGAACGTCATCAAGGACTCGGTCACGTACACGG 25277 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 |||||||| || ||||| || || ||||||| |||| || || | || || || | Sbjct 25278 AGCACGCTCGCCGCAAGACGGTGACGGCCATGGACGTCGTGTACGCGCTCAAGCGCCAGG 25337 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | | | || || || || ||||| Sbjct 25338 GCCGCACGCTCTACGGCTTCGGCGGTTAA 25366 Score = 145 bits (160), Expect = 1e-30 Identities = 195/269 (72%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | || ||||| || |||||||| || ||||||||||| || | Sbjct 27473 CGCCAAGCGCCACCGCAAGGTC-CTTCGTGACAACATCCAGGGCATCACCAAGCCCGCCA 27531 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||||||||||||||| ||||| || ||||||||| |||| || | |||| || || | Sbjct 27532 TCCGTCGTCTGGCTCGCCGTGGCGGTGTCAAGCGTATCTCGGGCCTCATCTACGAGGAAA 27591 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| | ||| ||||||| ||| ||| ||| | || | || || || | Sbjct 27592 CCCGCGGTGTCCTCAAGGTCTTCCTTGAGAACGTCATCAAGGACTCGGTCACGTACACGG 27651 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 |||||||| || ||||| || || ||||||| |||| || || | || || || | Sbjct 27652 AGCACGCTCGCCGCAAGACGGTGACGGCCATGGACGTCGTGTACGCGCTCAAGCGCCAGG 27711 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | | | || || || || ||||| Sbjct 27712 GCCGCACGCTCTACGGCTTCGGCGGTTAA 27740 >seq1341 Length=24127 Score = 136 bits (150), Expect = 6e-28 Identities = 193/269 (72%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | || ||||| || |||||||| || ||||||||||| || | Sbjct 2455 CGCCAAGCGCCACCGCAAGGTC-CTTCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 2513 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||||| ||||| ||||| ||||| ||||| | || || | |||| || |||| Sbjct 2514 TCCGCCGTCTTGCTCGCCGTGGCGGAGTTAAGCGCATTTCGGGTCTCATCTACGAGGAGA 2573 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| | ||| | |||||| ||| ||| ||| | || | || || || | Sbjct 2574 CGCGCGGTGTGCTCAAGGTTTTCCTCGAGAACGTCATCAAGGACTCGGTCACGTACACGG 2633 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || ||||| || || |||||||| |||| || || | || || || | Sbjct 2634 AGCACGCGCGCCGCAAGACGGTGACGGCCATGGATGTCGTATACGCGCTAAAGCGCCAGG 2693 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | | |||| || || || ||||| Sbjct 2694 GCCGCACGCTTTACGGCTTCGGCGGTTAA 2722 >seq915 Length=50172 Score = 127 bits (140), Expect = 3e-25 Identities = 187/262 (71%), Gaps = 2/262 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | || ||||| || || ||||| || ||||||||||| || | Sbjct 47827 CGCCAAGCGCCACCGCAAGGTC-CTTCGCGACAATATCCAGGGCATCACCAAGCCGGCCA 47885 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| |||||||| || ||||| || |||||||| |||| || | |||| || |||| Sbjct 47886 TCCGCCGTCTGGCGCGCCGTGGCGGTGTCAAGCGCATCTCGGGTCTCATCTACGAGGAGA 47945 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| | ||| | |||||| ||| ||| ||| | || | || || || | Sbjct 47946 CGCGCGGTGTGCTCAAGGTTTTCCTCGAGAACGTCATCAAGGACTCGGTCACGTACACGG 48005 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || ||||| || || |||||||| |||| || || | || || || | Sbjct 48006 AGCACGCGCGCCGCAAGACGGTGACGGCCATGGATGTCGTGTACGCGCTCAAGCGCCAGG 48065 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 |||| | | | || || || || Sbjct 48066 GCCGCACGCTCTACGGCTTCGG 48087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79072400391966