Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achlya_20hypogyna_20[genbank_20GCA_5F002081595.1_202017-04-06] 3,062 sequences; 43,398,470 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq880 107 2e-18 seq1567 100 2e-16 seq1051 98.7 8e-16 seq389 98.7 8e-16 seq2606 95.1 1e-14 seq400 87.8 2e-12 >seq880 Length=46309 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || || || || |||| || || ||||| || | Sbjct 27234 ATGCAGATCTTCGTCAAGACCTTGACGGGCAAGACCATCACGCTCGACGTGGAGCCCTCG 27175 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | ||| | |||| || || || || |||||||||||||| || || ||||| Sbjct 27174 GACTCGATTGACAACGTCAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCGGATCAG 27115 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||| | ||||| ||||||| |||| || |||||| Sbjct 27114 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCGGACTACAAC 27055 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 27054 ATCCAGAAGGAGTCGAC 27038 >seq1567 Length=70164 Score = 100 bits (110), Expect = 2e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| ||||| || || ||||| || || || || |||| || || || || || Sbjct 50029 AATATGCAGATTTTCGTCAAGACTTTGACTGGCAAGACCATCACGCTCGACGTTGAGCCC 49970 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || | | ||| | |||| || || || || ||||||||||| || || || ||| Sbjct 49969 TCGGACTCGATCGACAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGAT 49910 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || || || || || |||||||| ||| | |||||| |||||| | ||| ||| Sbjct 49909 CAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTGAGCGACTAC 49850 Query 22396 AACATTCAAAAAGAATCCAC 22415 ||||| || || || || || Sbjct 49849 AACATCCAGAAGGAGTCGAC 49830 >seq1051 Length=134064 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | || || || || |||| || || || || | | Sbjct 119730 ATGCAAATCTTCGTCAAGACGCTGACGGGCAAGACCATCACCCTCGATGTCGAGCCGTCG 119789 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | || || || || || ||||||||||| ||||| || ||||| Sbjct 119790 GACTCCATTGACAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCGGATCAG 119849 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||| | ||||| ||||||| |||| || |||||| Sbjct 119850 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCGGACTACAAC 119909 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 119910 ATCCAGAAGGAGTCGAC 119926 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| || || || || | | Sbjct 119958 ATGCAGATCTTCGTCAAGACGCTGACGGGCAAGACCATCACCCTCGATGTCGAGCCGTCG 120017 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | || || || || || ||||||||||| ||||| || ||||| Sbjct 120018 GACTCCATTGACAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCGGATCAG 120077 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||| | ||||| ||||||| |||| || |||||| Sbjct 120078 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCGGACTACAAC 120137 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 120138 ATCCAGAAGGAGTCGAC 120154 >seq389 Length=167588 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | ||||| || ||| |||| || || || || | || Sbjct 110547 ATGCAAATCTTCGTCAAGACGCTCACCGGCAAGACGATCACGCTCGACGTCGAGCCGTCC 110488 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | ||| | |||| || || || || ||||||||||| ||||| || || || Sbjct 110487 GACTCGATTGACAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 110428 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||||||||| ||| | ||||| |||||| | ||| |||||| Sbjct 110427 CAGCGCCTCATCTTTGCCGGCAAGCAGCTTGAGGACGGCCGCACGCTGAGCGACTACAAC 110368 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 110367 ATCCAGAAGGAGTCGAC 110351 >seq2606 Length=15791 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||||| || ||||| || |||| || || || || | | Sbjct 3370 ATGCAGATCTTCGTCAAGACTTTGACGGGTAAGACCATCACGCTCGACGTCGAGCCTTCG 3429 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | ||| | |||| || || || || ||||||||||| || || || ||||| Sbjct 3430 GACTCGATCGACAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGATCAG 3489 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||| | ||||| |||||| | || || |||||| Sbjct 3490 CAGCGCCTCATCTTCGCCGGCAAGCAGCTTGAGGACGGTCGCACCCTTTCGGACTACAAC 3549 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 3550 ATCCAGAAGGAGTCGAC 3566 >seq400 Length=224259 Score = 87.8 bits (96), Expect = 2e-12 Identities = 229/344 (67%), Gaps = 9/344 (3%) Strand=Plus/Minus Query 130015 TCGACTCGTTTCATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTCGCGCTT-- 130072 ||||| || ||||| |||| |||||| | ||||| ||| || || | || ||||| Sbjct 136225 TCGACGCGCTTCATGAACAGATCGGGGATCCACATGGCATAGAAGAGGTCGCGCGCGCGG 136166 Query 130073 TTCTATCCTCGGCACCCATGTTACGTTTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCC 130132 | | | ||| || ||| || || |||||||| ||| |||| || ||||||| Sbjct 136165 TGCAGT--TCGTTGCCGTGGTTCTTCTTGAGGTCAAGGAACTCGAAAATATCCGCGTGCC 136108 Query 130133 ACGGTTCAACATAAATTGCCATTGCGCCCTTCCGTTT---GCCCCCTTGGTCAACGTGGC 130189 |||| |||| || || || | | ||||||||| || || |||||||| |||| | Sbjct 136107 ACGGCTCAAGGTACATGGCAAAAGAGCCCTTCCGCTTACCACCGCCTTGGTCCACGTAAC 136048 Query 130190 GCACGGCATTGTTGTAGACTCGCAACATTGCCTCCAATCCGTTGGCCGTGCCGTTTGTGC 130249 || | | || |||| | || || | ||| | | ||||| | | |||||| |||| Sbjct 136047 GCGCTGTATCGTTGAACACGCGAAGCATGGGAATGATACCGTTAGAGGAGCCGTTCGTGC 135988 Query 130250 TCTCAATGAAACTGCCACGAGCCCGAACGTTATGAACGCTTAGACCTATGCCGCCGCCAA 130309 |||| | ||| | |||| ||| |||| | | | ||| ||||| ||| | Sbjct 135987 CACGAATGTAGCTGTTGGTCGAACGAATGTTGTGAATGTTGACACCAATGCCACCGGCCC 135928 Query 130310 ATTTTGATATCAACGCGCAATCGCGT-AGCGTTTCATAAATGCC 130352 | || || || | ||||| | || | ||||| || |||||||| Sbjct 135927 ACTTGGAAATGCAGGCGCACT-GCTTCAGCGTATCGTAAATGCC 135885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419712336538030