Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achlya_20hypogyna_20[genbank_20GCA_5F002081595.1_202017-04-06] 3,062 sequences; 43,398,470 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq779 194 3e-44 seq2872 181 2e-40 seq2199 102 2e-16 seq1752 93.3 9e-14 seq1449 93.3 9e-14 >seq779 Length=3608 Score = 194 bits (214), Expect = 3e-44 Identities = 458/680 (67%), Gaps = 39/680 (6%) Strand=Plus/Minus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || ||||| || ||||||||||||||||||||||| | ||| |||| || || || | | Sbjct 1902 GTCGGTTCGCTTTCGGGTGGTTGGAAGATGAAGCTCGAACTCGCTCGTGCGATGCTTCAG 1843 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 |||||| |||| || || |||||||| || |||||| |||| ||||||| || Sbjct 1842 AAGGCCGATATCCTCCTCCTCGATGAGCCCACGAACCACTTGGATGTGGCCAACGTTGCT 1783 Query 279816 TGGCTAGTGTCCTACCTAACCAGTC--TGAAGAATGTTTCTTCCCTCATTGTCTCTCACG 279873 ||||| | | |||||| || ||| || | | | | || |||||||| || |||| Sbjct 1782 TGGCTCGAGAACTACCTCAC--GTCCATGGACACGATCACGTCGCTCATTGTGTCGCACG 1725 Query 279874 ACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGC 279933 |||| || ||||| || ||| ||| | |||||| ||||| ||| | || | |||| Sbjct 1724 ACTCGGGTTTCCTCGACAACGTCTGCACGAACATCATCCACTACGAGAAGAACCGTAAGC 1665 Query 279934 TCTCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCCT 279993 || | | || |||||||| |||| | || || | || || ||||| || | Sbjct 1664 TCAAGACGTACGTCGGCAACATGTCCGAGTTTGTCAAGATTCGTCCGGAGGCCAAGGCTT 1605 Query 279994 ACTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGG 280053 |||||||||| | | || || | | | ||||||||||| || || || | | Sbjct 1604 ACTATGACCTCGACGCGGCTACAGTTGCTTTCAAGTTCCCTGAGCCCGGTTTCCTCGCCG 1545 Query 280054 GCATC-ACATCAAAGGATCGCGCAATCA------TGA-----AGCTCCGTGGCGTCTCCT 280101 ||| | | ||| || || | |||| ||| |||| ||| ||| Sbjct 1544 ATATCAAGAACAAGGGCAAGC-CCATCATTCGTTTGACCAACTGCTCGTACACGTACCCT 1486 Query 280102 -TTGCTTATCCCAATGGCCC-----CAACATCTTCAGCAGTGTCAACTCGCAGGTTTCTA 280155 ||| | | || |||| ||||| | ||||| || ||| || || Sbjct 1485 GGTGCGT---CGAA--GCCCTCGATCAACAACGTCAGC-GT---AACATGC-----GCTT 1440 Query 280156 TGAACTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAG 280215 || || || || | |||||| || ||||| ||||| |||||||| || | ||||| Sbjct 1439 TGTCGTCGCGTATCGCTGTCATCGGGCCCAACGGTGCCGGTAAGTCGACGATGATCAAGA 1380 Query 280216 TCCTGACTGGCGAGACCCAGGCCACTGAGGGGTCCG-TTTGGAAGCATCCCAACATGCGG 280274 | || || |||||||| | |||| | |||| || |||||||||| || |||||| Sbjct 1379 TGCTCACGGGCGAGACGGAACCCAC-CACGGGTACGCTTTGGAAGCACCCGGCCATGCGT 1321 Query 280275 ATGGCTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCT 280334 | || ||||| || ||||||||||||||||| || ||| | ||||||||||| | | Sbjct 1320 TTCGCGTACGTGGCCCAGCACGCTTTCCACCATATTGAGCAGCACCTGGACATCTCGGCC 1261 Query 280335 AACCAATACATTCAGTGGCG 280354 ||||| ||||| |||||||| Sbjct 1260 AACCAGTACATCCAGTGGCG 1241 Score = 107 bits (118), Expect = 4e-18 Identities = 128/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 279344 AGGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAA 279403 ||| ||||| || || ||||| || ||||| ||||| || ||||| | ||| || || || Sbjct 2251 AGGCGAGGACCTCTGCGACTGCGAGTTCTCCCTCGCGTACGGTGGCATGATCCTCCTGAA 2192 Query 279404 CTCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGC 279463 | | | ||||||||| ||||| || |||| || |||||| ||||| ||| || Sbjct 2191 CAATGCTCGCCTCAACCTCAAGAAGGGTCACCGCTACGGTCTCTGCGGTCGCAACGGTTG 2132 Query 279464 GGGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCC 279517 || ||| || || |||||||||||||| ||||| ||||| || || || || Sbjct 2131 CGGCAAGTCGACGCTCATGCGCGCCATTGCCAACGGCCAGCTCGAGGGCTTCCC 2078 >seq2872 Length=3431 Score = 181 bits (200), Expect = 2e-40 Identities = 448/669 (67%), Gaps = 17/669 (3%) Strand=Plus/Plus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || ||||| || ||||||||||||||||||||||| | ||| |||| || || || | | Sbjct 1637 GTCGGTTCGCTTTCGGGTGGTTGGAAGATGAAGCTCGAACTCGCTCGTGCGATGCTTCAG 1696 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 || ||| |||| || || |||||||| || |||||| |||| ||||||| || Sbjct 1697 AAGGCTGATATCCTCCTCCTCGATGAGCCCACGAACCACTTGGATGTGGCCAACGTTGCT 1756 Query 279816 TGGCTAGTGTCCTACCTAACCAGTC--TGAAGAATGTTTCTTCCCTCATTGTCTCTCACG 279873 ||||| | | |||||| || ||| || | | | || |||||||| || |||| Sbjct 1757 TGGCTCGAGAACTACCTCAC--GTCCATGGGCACGATCACGTCGCTCATTGTGTCGCACG 1814 Query 279874 ACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGC 279933 |||| || ||||| || ||| ||| | |||||| ||||| ||| | || | |||| Sbjct 1815 ACTCGGGTTTCCTCGACAACGTCTGCACGAACATCATCCACTACGAGAAGAACCGCAAGC 1874 Query 279934 TCTCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCCT 279993 || | | || |||||||| |||| ||||| | ||||| ||||| |||| Sbjct 1875 TCAAGACGTACGTCGGCAACATGTCCAAGTTCGTCGAGCTCCGCCCGGAGGCCAAGGCCT 1934 Query 279994 ACTATGACCTGAAGGACGCCAC---CGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGG 280050 |||||||||| | | ||||| |||| | | ||||| ||||| || || || | Sbjct 1935 ACTATGACCTCGATGCGGCCACGATCGCC---TTCAAGTTCCCCGAGCCTGGTTTCCTCG 1991 Query 280051 AGGGCATC-ACATCAAAGGATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTTAT 280109 | ||| | | ||| || || | ||||| | | ||| | | || Sbjct 1992 CCGATATCAAGAACAAGGGCAAGC-CCATCATTCGTTTGACCAACTGCTCGTACACGTAC 2050 Query 280110 CCCAATGGCCCCAA--CATC-TTCAGCAGTGTCAACTCGCAGGT-TTCTATGAACTCACG 280165 || || | || | || ||| | |||| || || || | | || || Sbjct 2051 CCTGGTGCGTCGAAGCCCTCGATCAACGATGTC-ACGATCACGTGCGCCCTCTCGTCGCG 2109 Query 280166 GATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGG 280225 || | ||||| || ||||| ||||| |||||||| || | ||||| | || || || Sbjct 2110 TATCGCCGTCATCGGCCCCAACGGTGCCGGTAAGTCGACGATGATCAAGATGCTTACGGG 2169 Query 280226 CGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGT 280285 |||||| | |||| ||| |||| |||||||| || |||||| | || ||||| Sbjct 2170 CGAGACGGAACCCACCACGGGTACCGTCTGGAAGCACCCGGCCATGCGTTTCGCGTACGT 2229 Query 280286 CGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACAT 280345 || |||||||||||||||||||| ||| | ||||| ||||| | | ||||| ||||| Sbjct 2230 GGCCCAGCACGCTTTCCACCACATTGAGCAGCACCTTGACATCTCGGCCAACCAGTACAT 2289 Query 280346 TCAGTGGCG 280354 |||||||| Sbjct 2290 CCAGTGGCG 2298 Score = 102 bits (112), Expect = 2e-16 Identities = 127/174 (73%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 279344 AGGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAA 279403 ||| ||||| || || ||||| || ||||| ||||| || ||||| | ||| || || || Sbjct 1288 AGGCGAGGACCTCTGCGACTGCGAGTTCTCCCTCGCGTACGGTGGCATGATCCTCCTCAA 1347 Query 279404 CTCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGC 279463 | ||||| | ||| ||||| ||| |||| || |||||| ||| ||||| || Sbjct 1348 CAACGCCCGCATGAACCTCAAGAAGGGCCACCGCTACGGTCTCTGCGGCCCCAACGGTTG 1407 Query 279464 GGGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCC 279517 || ||| || || |||||||||||||| ||||| ||||| || || || || Sbjct 1408 CGGCAAGTCGACGCTCATGCGCGCCATTGCCAACGGCCAGCTCGAGGGCTTCCC 1461 >seq2199 Length=144029 Score = 102 bits (112), Expect = 2e-16 Identities = 325/494 (66%), Gaps = 14/494 (3%) Strand=Plus/Plus Query 218648 AAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACG 218707 |||| || ||||| || ||| | | || || || || ||| || | ||||| |||| Sbjct 59846 AAGAGATCAAGGTTGCGCAGCTGGCGGGGTACGTCTCAGAACACTCGGCATACCACCACG 59905 Query 218708 GTGA-GCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAAC 218766 | || ||| | ||||| || | || | |||||| || |||| ||| ||||| ||| Sbjct 59906 GCGAAGCATCG-CTGCACGGCACGATCATCAACATGGCCCAAGACTTTGTCGGCAGCAAC 59964 Query 218767 AACATGAACTTGCTGCTC-CCCAACGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGA 218825 ||| || ||||||| ||| |||||||| || || || | || || ||| || ||||| Sbjct 59965 AACCTGCACTTGCT-CTCTCCCAACGGGCAATTCGGCACGCGGCTTAAGGGAGGCAAGGA 60023 Query 218826 TAGTGCTTCTGCCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCGCCAGGTGTTCAA 218885 ||| ||| | || |||| || ||| || | | | || ||| ||||||| | Sbjct 60024 CGCGGCTAGTGCTCGTTACGTCTTCACGAAGCTGGAGACGCTCACACGCATGGTGTTCCA 60083 Query 218886 TCAGGCCGATGATGTGCTCCTTAAGTATCTTGAGGACGATGGTTCTTCGATTGAGCCCGA 218945 || | ||| || | || ||| || || || || || |||||||||||||| Sbjct 60084 TCCGCTCGACGACAGCGTACTCTCGTACCTCGAAGAAGAAGGCCTCTCGATTGAGCCCGA 60143 Query 218946 GTGGTATGTGCCTGCTATTCCGTTTTTGCTCGTAAATGGTGCCAATGGTATCGGGACAGG 219005 |||||| |||| | |||||| | |||||| || || | | || ||||| || || Sbjct 60144 GTGGTACATGCCAGTTATTCCCCTGGCGCTCGTCAACGGCAGCGACGGCATCGGTACCGG 60203 Query 219006 --GTTCAGTACTGACATTCCTTCTTACAATCCCAAGGACATCATTGACAACGT---CAAG 219060 | || | | | ||| || ||||| ||| |||||||| | ||| | | || Sbjct 60204 CTGGTC-GAGCAG-CATCCCCAACTACAACCCCGTCGACATCATCAAGAACATTCGCCAG 60261 Query 219061 CGTCTCATATCTGGCAAGGAGATGGTACCGATGTCTCCGTGGTACAAGGAGTTTACTGGG 219120 || ||| | | || ||||| ||||| ||||||||| | ||| | ||| Sbjct 60262 CGCATCAAGGCGG---AGCCGATGGAGGCGATGCAGCCGTGGTACCGTGGGTTCAAGGGG 60318 Query 219121 TCTATTGTCCAGAA 219134 ||||| |||||||| Sbjct 60319 TCTATCGTCCAGAA 60332 >seq1752 Length=1801 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 515 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 574 Query 142563 CCCCAC 142568 |||||| Sbjct 575 CCCCAC 580 >seq1449 Length=1187 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 315 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 374 Query 142563 CCCCAC 142568 |||||| Sbjct 375 CCCCAC 380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027796476035142