Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achlya_20hypogyna_20[genbank_20GCA_5F002081595.1_202017-04-06] 3,062 sequences; 43,398,470 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq2528 313 5e-80 seq400 273 4e-68 >seq2528 Length=14935 Score = 313 bits (346), Expect = 5e-80 Identities = 577/838 (69%), Gaps = 11/838 (1%) Strand=Plus/Minus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 |||||||||||||| || | |||||| ||||| || | || || | | | || Sbjct 5621 ATGTACAAGAAGGCCGAGGCGAGCTTCTGGACAGCCGAAGAACTCGATCTCGTCCACGAT 5562 Query 42369 ACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATACTGGCC 42428 | | ||||||| || | || ||||| || ||| ||| || | || || Sbjct 5561 CTGAAGGACTGGGAGAAGCTCACGGACAACGAGCGCTTCTTCATCACGCACGTGCTTGCG 5502 Query 42429 TTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAGAG 42488 ||||||||||| ||||||||||| || ||||||||| |||||| | ||| || || Sbjct 5501 TTCTTCGCCGCGTCTGACGGCATTGTAAATGAGAACTTGGCCATGAACTTCTCCAACGAA 5442 Query 42489 GTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCAC 42548 || ||| ||| || || |||||||| ||||| ||||| || || || ||| | ||| Sbjct 5441 GTTCAGGTGCCTGAAGCTCGTTGCTTCTATGGCTTTCAGATCGCTATTGAAAACATCCAC 5382 Query 42549 TCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTAACGGG 42608 || || || ||| | ||| | ||||||||||| ||| | || ||| || | Sbjct 5381 TCCGAAGTCTACTCGCTACTTATTGACACGTACATCAAGGACACGGTTGAGAAGGACCGC 5322 Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 || || ||||| || ||||| || || || || ||||| | ||||||||||| Sbjct 5321 GTGCTCCGCGCCATCGACACGATCCCGTGTGTCCAGCGCAAGGCCCAGTGGGCGCTCAAG 5262 Query 42669 TGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAG 42728 ||| | | | | ||| | | || ||| | | || ||||| | || ||||| Sbjct 5261 TGGTGCAACAACCAAATCGCTGCTTACGCCGAACGCATCGTTGCCTTCGCTGCTGTCGAA 5202 Query 42729 GGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGAT 42787 ||||| |||||||| ||| ||||| ||||||||||||||||||| || ||| || || Sbjct 5201 GGCATTTTCTTCTCTGGCTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGTCTC-AT 5143 Query 42788 GCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTT 42847 ||| || | | ||| ||||| || |||||| | ||||| || || || | ||||| Sbjct 5142 GCCGGGCTTGAGCTTTTCGAATGAGCTCATCTCGCGCGACGAAGGCCTTCACTGCGACTT 5083 Query 42848 TGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGC 42907 ||||||||| ||| ||||| | |||| |||||| ||| || ||||| ||| | Sbjct 5082 CGCCTGCCTCATGTACTCGA---AGCTCATCAACAAGCTCTCAAACGAGCGCATCCATGA 5026 Query 42908 CATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTC 42967 |||||| || ||||| |||||||||||| ||||| | | | ||||| || || Sbjct 5025 GATCATCGGTGACGCCGTCGAGATCGAGAAGCAGTTCGTTTCCGAATCGCTCCCTGTCGA 4966 Query 42968 CCTGGTCGGCATGAACCACGAC-CTCATGTGCAAGTACATCCAGTACGTCGCCGACCATC 43026 || |||||||||| | |||| ||||||||| | |||||| | | | |||||||| | Sbjct 4965 ACTCATCGGCATGAA-CTCGACGCTCATGTGCCAATACATCGAATTCTGCGCCGACCGCC 4907 Query 43027 TCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCC--GTGCCCCTTCGACTTTAT 43084 | || | | || || | |||| | |||||| | ||| ||||||| || Sbjct 4906 TTCTCAACGCCCTTGGCGCCACCAAGCTCTTC--CACGCCAAGAACCCATTCGACTGGAT 4849 Query 43085 GGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTAC 43142 ||| | ||||| | |||||||||||||||| |||||||||||||||| ||| ||| Sbjct 4848 GGATATGATCTCCCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAGTAC 4791 >seq400 Length=224259 Score = 273 bits (302), Expect = 4e-68 Identities = 1083/1683 (64%), Gaps = 77/1683 (5%) Strand=Plus/Minus Query 243776 AGGTAGTACATGCCGGTCTTGAGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGC 243835 ||||||||||||||||||||||| || | ||| |||| | |||||| | || ||| Sbjct 137410 AGGTAGTACATGCCGGTCTTGAGACCGCGCTTCCACGCGTAAAAGTGCATCGATGTAAGC 137351 Query 243836 TTCTTCATCTTGAGCTTTGGGTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGG 243895 || ||| ||| |||||| | | || ||| | ||||| |||| Sbjct 137350 TTGCTCAC-----GCTC-GGGTCGGCGATGTGCAC------GTTCATCGACTGCGACTGG 137303 Query 243896 TCGACGAAGGGCGCC-CGCTCTGCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCATA 243954 || ||||| |||| || || || |||| | | | ||||||| | ||| | Sbjct 137302 CAGATGAAGG-CGCCTCGGTCGGCCGCCAGGTCCAGCACCACCTTCTGCTTGACCTCCCA 137244 Query 243955 CGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCC 244014 | |||||||||| ||| ||||| | ||| ||||| | ||| | ||| || ||| Sbjct 137243 CACCGTCTTGTAAATGTCCTTGATGCGCTTGGGGATCGTGGCGACGCCCTGAACACTGCC 137184 Query 244015 C---TTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCCAG 244071 | || | ||| |||| |||| | || || |||| ||||| | || Sbjct 137183 ACGATCATGCAAGAT---CTGGTTGCGAACGTCGGCGCTCCAGAGGCCGAGTGAAATGAG 137127 Query 244072 CGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTA 244131 ||| | |||| | |||| || | | ||| || |||| |||||||| ||| ||| Sbjct 137126 TTCCTTCATGAGGTACTTGTTGACGATCGTAAATTCGCCCGCAAGCACGCGCCGCGAGTA 137067 Query 244132 GAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGC 244191 | |||| ||| ||||||||| || ||||||| || ||||| || || || Sbjct 137066 CATGTTGGACGTGAATGGCTCGATGGATTCGTTGTTGCCGAGGATCTGGGCTGTCGATGC 137007 Query 244192 AGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCT 244251 || ||||| |||| || ||| ||| ||| | |||||| || | | | | | || Sbjct 137006 CGTGGGCATCGGCGCCAGCAGTAGAGAGTTGCGCACGCCATGAG-CAGCCACCTGCGCCT 136948 Query 244252 -GAGC-TCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCA 244309 |||| ||| ||||||||| | || ||| || | | ||||||||||| Sbjct 136947 TGAGCGTCGC-CCAGTCCCAGA-----GATCAGTCGGCG----TCACACCCCACATGTCG 136898 Query 244310 AACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGC 244369 |||| | | |||| | |||||| || ||| ||| |||||| ||| || Sbjct 136897 TACTGGAAGCGGCCCTGGGAGACGGGCGACCCGGAGTACGTCTCGTAGGGGCCGAGCTGC 136838 Query 244370 TGGGCCAGCTT-ACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTT 244428 | ||| |||| | | || || | | ||||| |||||| ||||| |||||| | Sbjct 136837 TTGGCGAGCTCCATCGAAGTC-TCCATAGAGGCGTGGTAGATCGTCTCAAAGATCTGGAT 136779 Query 244429 GTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGC 244488 ||| | | ||||| | | ||| ||| |||||| | |||||| | || || Sbjct 136778 GTTGAGCTTCTTGGCCTCGGGCGACTCGAACGGGTAGCCCATGAGGATGAAGGCATCCGC 136719 Query 244489 CAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTG-----GAGCGCATGGCT 244543 || ||||| || |||||||||| ||| | ||| ||| ||||| | |||| | | Sbjct 136718 GAGGCCCTGGACACCGATGCCGACGGGGCGGTGGCGCATGTTGCTGTTGCGCGCCT--CC 136661 Query 244544 TCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGG 244603 ||| | ||||| ||||| |||| ||||||||||| | ||||||||||| || | Sbjct 136660 TCGATC---GGGTAGTAGTTGACGTCAATCACCTTGTTCAAGTTGCGGGTGACGATCTTG 136604 Query 244604 ACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTC 244663 ||| | | || || ||||||| | | | | || | | Sbjct 136603 GTGACCTTGTGGAGGTTCTTAAAGTCGAAGAC------ACCGTCAG------------TA 136562 Query 244664 ACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTG 244723 ||||||| | ||| || | | || |||||||| || || ||||| ||| | | ||| Sbjct 136561 ACAAACTTGGAGAGCGCAATGGACGCGAGGTTGCACACAGCGACCTCGTCCTTGCTCGTG 136502 Query 244724 TACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTG 244783 |||| || | ||| ||| |||||||||| |||||| || || |||| ||| || || Sbjct 136501 TACTCGATGACTTCGCAGCAAAGGTTACTGCTCTTGATCGTACCAAGGTTCTGCTGGTTC 136442 Query 244784 GACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCG 244843 ||||||| ||||| ||||||||||| |||||| ||||| || ||||||| ||| | Sbjct 136441 GACTTGGAATTGCACGCGTCCTTGTAAAGCATGTAGGGCGTGCCAGTCTCGATCTGCGAA 136382 Query 244844 ACGAGGA-CGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGC 244902 |||| | ||| ||| || | ||||||| | ||||||| |||||||| Sbjct 136381 TCGAGCATCGC-AAACCACAGCTGTTGGGCCTTGATGACCTTGCGAGCGCGACCCTCTGC 136323 Query 244903 CTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCA 244962 |||||| || |||||| || |||||||||| ||||||| ||| | || || ||| Sbjct 136322 CTCGTACTTGGCGTACAGCGCTTCGAACTCGGCGCCCCAGCAGTCGGCGAGACCAGGG-G 136264 Query 244963 CGACG-CCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGT 245021 | || |||||| | ||| |||||||| ||| | || ||| | || |||||| || | Sbjct 136263 CTTCGTTCGGGCAAAAGAGGCTCCACTCCCCGTTGGACTCGACGCGCTTCATGAACAGAT 136204 Query 245022 CGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCT 245081 |||||||||| | ||| | ||||||||| | | | ||| || ||| ||||| Sbjct 136203 CGGGGATCCACATGGCATAGAAGAGGTCGCGCGCGCGGTGCAGTTCGTTGCCGTGGTTCT 136144 Query 245082 TCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGG 245141 || | || || | || || || | || ||||||| ||||| | ||| | || | | Sbjct 136143 TCTTGAGGTCAAGGAACTCGAAAATATCCGCGTGCCACGGCTCAAGGTACATGGCAAAAG 136084 Query 245142 CGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGAAGATGCGCA 245201 ||| |||||| || || |||||||| | | | ||||||| | ||| | Sbjct 136083 AGCCCTTCCGCTTACCACCGCCTTGGTCCACGTAACGCGCTGTATCGTTGAACACGCGAA 136024 Query 245202 GGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCC- 245260 | | || | || ||||||||| |||||| ||||| ||||| || ||| | Sbjct 136023 GCATGGGAATGATACCGTTAGAGGAGCCGTTCGTGCCACGAATGTA---GCTGTTGGTCG 135967 Query 245261 --CTGAGGTTGCTGATG--GACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCA 245316 | | |||| ||| |||| || | || ||||| |||||| ||| |||||| Sbjct 135966 AACGAATGTTGTGAATGTTGACA--CCAATGCCACCGGCCCACTTGGAAATGCAGGCGCA 135909 Query 245317 GCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCA 245376 ||| | || || |||||||| || ||| |||| ||| || ||||| Sbjct 135908 CTGCTTCAGCGTATCGTAAATGCCCTCAATTGAGTCGTCGCGCATGGCGAGAAGGAAGCA 135849 Query 245377 GGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAA 245436 || || ||||| || || | | | |||||| ||||| || | ||||| || || Sbjct 135848 CGACGAGAGCTGTGGACGAGGCGTACCGGCGTTGAAGAGAGTAGGCGTCGCGTGCGTGAA 135789 Query 245437 GTA 245439 ||| Sbjct 135788 GTA 135786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944303055417120