Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achlya_20hypogyna_20[genbank_20GCA_5F002081595.1_202017-04-06] 3,062 sequences; 43,398,470 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq389 93.3 3e-14 seq2606 86.0 5e-12 seq880 82.4 6e-11 >seq389 Length=167588 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | || ||||| || || || ||||| ||||||||| |||||||| || || Sbjct 110321 CCTCCACGAAGGCGCAGGACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTC-GCT 110379 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || || |||| || | |||||||||||||| || ||||||||||| ||| || Sbjct 110380 CAGCGTGCGGCCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCCGGGGG 110439 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTA-TCAGTAGATTCGC 34078 | || ||| |||||| || || ||||| | | ||| | | || | | ||| Sbjct 110440 AATGCCCTCCTTGTCCTGGATCTTCTGCTTGA-CGTTGTCAATCGAGTCGGACGGCTCGA 110498 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||| ||| || || || ||||| || || || || ||||||||||| Sbjct 110499 CGTCGAGCGTGATCGTCTTGCCGGTGAGCGTCTTGACGAAGATTTGCAT 110547 >seq2606 Length=15791 Score = 86.0 bits (94), Expect = 5e-12 Identities = 111/151 (74%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| || || || || |||||||| ||||||||| |||||||| || | Sbjct 3597 ACCACCACGCAGGCGAAGGACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCCGA 3538 Query 33960 CAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 || || || |||| || | ||||||||||| || || ||||||||||||||| | Sbjct 3537 -AAGGGTGCGACCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCCGGGG 3479 Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | | || ||| |||||| || || ||||| Sbjct 3478 GGATGCCCTCCTTGTCCTGGATCTTCTGCTT 3448 >seq880 Length=46309 Score = 82.4 bits (90), Expect = 6e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| || ||||| || |||||||| ||||||||| |||||||| || | Sbjct 27007 ACCACCACGCAGGCGGAGCACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCCGA 27066 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || |||| || | ||||||||||| || || ||||||||||||||| || Sbjct 27067 GAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCCGGGGG 27126 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | | ||| |||||| || || ||||| Sbjct 27127 GATACCCTCCTTGTCCTGGATCTTCTGCTT 27156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397047582375724