Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achlya_20hypogyna_20[genbank_20GCA_5F002081595.1_202017-04-06] 3,062 sequences; 43,398,470 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1051 129 1e-24 seq2606 125 2e-23 seq880 122 2e-22 seq389 120 7e-22 seq1567 116 9e-21 >seq1051 Length=134064 Score = 129 bits (142), Expect = 1e-24 Identities = 171/235 (73%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| |||||||| || | || ||||| || | ||| || || ||||| || |||| Sbjct 119960 CATG-CCACCGCGCAGGCGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGT 119902 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | ||| ||||| ||||| || | || || || |||||||| || ||||| ||| | Sbjct 119901 CCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGA---T 119845 Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 | ||| || || || || |||||||| ||| |||||||| || || || || || Sbjct 119844 CCGGGGGAATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTGTCAATGGAGTCCGACG 119785 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| ||||| || ||||| ||||||||||| || ||||| Sbjct 119784 GCTCGACATCGAGGGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGATTTGCAT 119730 Score = 129 bits (142), Expect = 1e-24 Identities = 169/233 (73%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || || || ||||| | || ||||| || | ||| || || ||||| || ||||| Sbjct 120187 TGGCCGCCACGGAGGCGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCC 120128 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | ||| ||||| ||||| || | || || || |||||||| || ||||| ||| || Sbjct 120127 GAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGA---TCC 120071 Query 288364 GGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 ||| || || || || |||||||| ||| |||||||| || || || || || Sbjct 120070 GGGGGAATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTGTCAATGGAGTCCGACGGC 120011 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| ||||| || ||||| ||||||||||| |||||||| Sbjct 120010 TCGACATCGAGGGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 119958 >seq2606 Length=15791 Score = 125 bits (138), Expect = 2e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || || |||| ||| || || ||||| || ||||| | Sbjct 3596 CCACCACGCAGGCGAAGGACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAA 3537 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | || || || |||||||| || ||||| ||| ||| Sbjct 3536 AGGGTGCGACCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCCGGGGGG 3477 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| ||| || ||||| || || || || | || || Sbjct 3476 ATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCGACG 3417 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||||||||| ||||| || |||| |||||||||||| |||||||| Sbjct 3416 TCGAGCGTGATGGTCTTACCCGTCAAAGTCTTGACGAAGATCTGCAT 3370 >seq880 Length=46309 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || || |||| ||| || || ||||| || ||||| | | Sbjct 27008 CCACCACGCAGGCGGAGCACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAG 27067 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | || || || |||||||| || ||||| ||| ||| Sbjct 27068 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCCGGGGGG 27127 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| ||| || ||||| || || || || | || || Sbjct 27128 ATACCCTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCAATCGAGTCCGAGGGCTCCACG 27187 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTAT 288476 ||||||||||| ||||| || |||| ||||||||||| |||||||| || Sbjct 27188 TCGAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATCTGCATGAT 27237 >seq389 Length=167588 Score = 120 bits (132), Expect = 7e-22 Identities = 167/233 (72%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || || || || || | || ||||| || | ||| || || ||||| || |||||| Sbjct 110318 TGGCCTCCACGAAGGCGCAGGACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCG 110377 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 |||||||| ||||| || | || || || || ||||| || ||||| || || Sbjct 110378 CTCAGCGTGCGGCCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGG---TCC 110434 Query 288364 GGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 ||| || || || || |||||||| ||| || ||||| || || || ||| || Sbjct 110435 GGGGGAATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCAATCGAGTCGGACGGC 110494 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||||||||||||||| ||||| || ||||||||||| || ||||| Sbjct 110495 TCGACGTCGAGCGTGATCGTCTTGCCGGTGAGCGTCTTGACGAAGATTTGCAT 110547 >seq1567 Length=70164 Score = 116 bits (128), Expect = 9e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || || || | ||| || || ||||| || |||||| Sbjct 49800 CCACCACGAAGGCGGAGGACAAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 49859 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| || || || | || || || |||||||| || ||||| ||| ||| Sbjct 49860 AGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCCGGGGGG 49919 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| ||| || ||||| || || || || | || || Sbjct 49920 ATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCGATCGAGTCCGAGGGCTCAACG 49979 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||||||||| ||||| || |||| |||||||||||| |||||||| Sbjct 49980 TCGAGCGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAAATCTGCAT 50026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179608119946036