Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achlya_20hypogyna_20[genbank_20GCA_5F002081595.1_202017-04-06] 3,062 sequences; 43,398,470 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq2528 143 6e-29 seq779 136 9e-27 seq2872 132 1e-25 >seq2528 Length=14935 Score = 143 bits (158), Expect = 6e-29 Identities = 566/876 (65%), Gaps = 32/876 (4%) Strand=Plus/Minus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 ||||| |||||| || ||||| ||||||| ||||| |||||||| | ||| | ||| ||| Sbjct 5651 TTCCCGATCCAGCATGCGGATGTGTGGGAAATGTACAAGAAGGCCGAGGCGAGCTTCTGG 5592 Query 242935 ACCACCGAGGAAGTTCCTCTGAACGCAGACGTCGTCGACTGGCGCGAGAAACTCAATGAC 242994 || |||| ||| | ||| | || | |||||| ||||| |||| ||| Sbjct 5591 ACAGCCGAAGAACTCGATCTCGTCCACGATCTGAAGGACTGG---GAGAAGCTCACGGAC 5535 Query 242995 GACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGATGGTATTGTG 243054 |||| || ||||||| ||| | || | || ||||| | || || || ||||| Sbjct 5534 AACGAGCGCTTCTTCATCACGCACGTGCTTGCGTTCTTCGCCGCGTCTGACGGCATTGTA 5475 Query 243055 ATGGAAAATCTGCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAATTT 243114 | || || || | ||||| ||||| ||| || || || || || Sbjct 5474 AATGAGAACTTGGCCATGAACTTCTCCAACGAAGTTCAGGTGCCTGAAGCTCGTTGCTTC 5415 Query 243115 TATG-CTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCTTCTTATCGA 243173 |||| ||| | | | | | ||| ||||| || ||| || | || ||||| || Sbjct 5414 TATGGCTTTCAGATCGCT-ATTGAAAACATCCACTCCGAAGTCTACTCGCTACTTATTGA 5356 Query 243174 CGCGCTTATTTCAGATGAACAAGAGCGA-AACGAGC---TTTTCGACGCCATCGAAAACA 243229 | || || ||| | ||| | || || || | | || ||||||||| | | Sbjct 5355 CACG--TACATCAA--GGACACGGTTGAGAAGGACCGCGTGCTCCGCGCCATCGACACGA 5300 Query 243230 TTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGG--CTAGAACCCGGTAAATC 243287 | ||| || || |||||| | ||||| | |||||| | | |||| ||||| Sbjct 5299 TCCCGTGTGTCCAGCGCAAGGCCCAGTGGGCGCTCAAGTGGTGCAACAACC----AAATC 5244 Query 243288 ATTT-----GCTGAGCGTCTCGTCGCCTGGGTGTGC-GTTGAAGGTATTCTGTTTTCCGG 243341 | || || || |||| |||| | ||| || ||||| ||| | || || || Sbjct 5243 GCTGCTTACGCCGAACGCATCGTTGCCTTCGC-TGCTGTCGAAGGCATTTTCTTCTCTGG 5185 Query 243342 GAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTC 243401 |||||| ||||||| ||||| ||| ||| | ||||| ||| | | | || Sbjct 5184 CTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCGGGCTTGAGCTTTTC 5125 Query 243402 TAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTC 243461 || ||| ||||| |||||||| ||||||||| | |||| || ||||| || Sbjct 5124 GAATGAGCTCATCTCGCGCGACGAAGGCCTTCACTGCGACTTCGCCTGCCTCATGTACTC 5065 Query 243462 AAAGCTCCAGAACAAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTGA 243521 |||||| |||||||| || ||| || | | |||||| || || || || Sbjct 5064 GAAGCTCATCAACAAGCTCTCAAACGAGCGCATCCATGAGATCATCGGTGACGCCGTCGA 5005 Query 243522 AAACGAAAAGGAATTCATTTGCGA--CGCTATTCCATGCCGG-CTTATTGGCATGAACTC 243578 | ||| ||| | ||| ||| ||| |||| || || || || || ||||||||||| Sbjct 5004 GATCGAGAAGCAGTTCGTTTCCGAATCGCT---CCCTGTCGAACTCATCGGCATGAACTC 4948 Query 243579 TGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTA 243638 |||||| | || |||||||||||| ||||||||| || ||| ||| ||||| Sbjct 4947 GACGCTCATGTGCCAATACATCGAATTCTGCGCCGACCGCCTTCTCAACGCCCTTGGCGC 4888 Query 243639 TGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGG 243698 || | | | || |||||||||| || | || ||||| | || || || || || Sbjct 4887 CACCAAGCTCTTCCACGCCAAGAACCCATTCGACTGGATGGATATGATCTCCCTCCAGGG 4828 Query 243699 GAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTA 243734 || || ||||||||||| ||||| ||| | || || Sbjct 4827 CAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAGTA 4792 >seq779 Length=3608 Score = 136 bits (150), Expect = 9e-27 Identities = 450/686 (66%), Gaps = 18/686 (3%) Strand=Plus/Plus Query 333315 TCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGA 333374 || ||||| || ||||| ||||||| ||||| |||||||||| | ||||| || Sbjct 1217 TCCTTGTCCTCGCCGGACTGGAAACGCCACTGGATGTACTGGTTGGCCGAGATGTCCAGG 1276 Query 333375 TGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGC 333434 || | ||| || ||||||||||| ||||| |||||||| || | |||||| || ||| Sbjct 1277 TGCTGCTCAATATGGTGGAAAGCGTGCTGGGCCACGTACGCGAAACGCATGGCCGGGTGC 1336 Query 333435 TTCCAAACACTTCCGTTGGTGGCTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCTT 333494 ||||||| | || |||||| |||| | | |||||||||| ||| || | || Sbjct 1337 TTCCAAAGCGTACCCGTGGTGGGTTCCGTCTCGCCCGTGAGCATCTTGATCATCGTCGAC 1396 Query 333495 TTTCCCGCACCATTTTCGCCTACCACACCAATCCTGGAGTTC--AGCGATACCTGGGCAT 333552 || || ||||| || || | ||| | || | || | |||| | || Sbjct 1397 TTACCGGCACCGTTGGGCCCGATGACAGCGATACGCGACGACAAAGCGCATGTTACGC-- 1454 Query 333553 TCACGTTGTCAAAGAT-TAGTTTTTC--CGTACCCGGATACTTGAACCCCACACCGCGT- 333608 | ||||||| ||| || ||| || ||| || ||| || | | || || Sbjct 1455 TGACGTTGT---TGATCGAGGGCTTCGACGCACCAGGGTACGTGTA-CGAGCAGTTGGTC 1510 Query 333609 AGCTTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGGAAC 333668 | ||||||| | |||| ||||| | ||||||| |||||||| |||||| Sbjct 1511 AAACGAATGATGGGCTTGCCCTTGTTCTTGATATCGGCGAGGAAACCGGGCTCAGGGAAC 1570 Query 333669 TTCCACGTGGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGACGCTTCTTC 333728 || | | | | | || ||| | |||||| | | || ||||| |||| Sbjct 1571 TTGAAAGCAACTGTAGCCGCGTCGAGGTCATAGTAAGCCTTGGCCTCCGGACGAATCTTG 1630 Query 333729 ACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATA 333788 || |||||||||| || || |||| |||| ||||| |||| ||||| ||||| Sbjct 1631 ACAAACTCGGACATGTTGCCGACGTACGTCTTGAGCTTACGGTTCTTCTCGTAGTGGATG 1690 Query 333789 ATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACG-AAAC 333847 || ||||| || ||||||||| || |||||||| |||||||| | ||| | | Sbjct 1691 ATGTTCGTGCAGACGTTGTCGAGGAAACCCGAGTCGTGCGACACAATGAGCGACGTGATC 1750 Query 333848 GTCCTTAAGGTTGATCAGGTA-TTCAATC-AGCCACCTCACGTTAGACACAGAAAGATGG 333905 || | || | | ||||| ||| || ||||| ||||| | |||| | ||| Sbjct 1751 GTGTCCATGGACG-TGAGGTAGTTC--TCGAGCCAAGCAACGTTGGCCACATCCAAGTGG 1807 Query 333906 TTGGTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCG 333965 || || ||||| || || || || | | || ||| | ||||| ||||| || || || Sbjct 1808 TTCGTGGGCTCATCGAGGAGGAGGATATCGGCCTTCTGAAGCATCGCACGAGCGAGTTCG 1867 Query 333966 AGTTTCATTTTCCACCCTCCTGAAAG 333991 || ||||| ||||| || || ||||| Sbjct 1868 AGCTTCATCTTCCAACCACCCGAAAG 1893 Score = 93.3 bits (102), Expect = 9e-14 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 334179 GAGGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCC 334238 || ||||| || || ||||| ||||| |||| |||||||| || || || || || Sbjct 2075 GACGGGAAGCCCTCGAGCTGGCCGTTGGCAATGGCGCGCATGAGCGTCGACTTGCCGCAA 2134 Query 334239 CCGTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTC 334298 ||||| | || || ||||||||||||| || ||| || |||| || | ||||||| Sbjct 2135 CCGTTGCGACCGCAGAGACCGTAGCGGTGACCCTTCTTGAGGTTGAGGCGAGCATTGTTC 2194 Query 334299 AGAAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATCCTCACC 334354 || || || | ||||| || || || || || || || || || || ||||| || Sbjct 2195 AGGAGGATCATGCCACCGTACGCGAGGGAGAACTCGCAGTCGCAGAGGTCCTCGCC 2250 >seq2872 Length=3431 Score = 132 bits (146), Expect = 1e-25 Identities = 449/685 (66%), Gaps = 16/685 (2%) Strand=Plus/Minus Query 333315 TCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGA 333374 || ||||| || ||||| ||||||| ||||| |||||||||| | |||||||| Sbjct 2322 TCCTTGTCCTCGCCGGACTGGAAACGCCACTGGATGTACTGGTTGGCCGAGATGTCAAGG 2263 Query 333375 TGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGC 333434 || | ||| |||||||||||||| ||||| |||||||| || | |||||| || ||| Sbjct 2262 TGCTGCTCAATGTGGTGGAAAGCGTGCTGGGCCACGTACGCGAAACGCATGGCCGGGTGC 2203 Query 333435 TTCCAAACACTTCCGTTGGTGGCTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCTT 333494 ||||| || | || |||||| |||| | | ||||| |||| ||| || | || Sbjct 2202 TTCCAGACGGTACCCGTGGTGGGTTCCGTCTCGCCCGTAAGCATCTTGATCATCGTCGAC 2143 Query 333495 TTTCCCGCACCATTTTCGCCTACCACACCAATCCTGGAGTTCAGCG-ATACCTGGGCAT- 333552 || || ||||| || ||| | || | || | || || | || || | | Sbjct 2142 TTACCGGCACCGTTGGGGCCGATGACGGCGATACGCGACGAGAGGGCGCACGTGATCGTG 2083 Query 333553 TCA-CGTTG-TCAAAGATTAGTTTTTCCGTACCCGGATACTTGAACCCCACACCGCGT-A 333609 || ||||| || | | | || || ||| || ||| || | | || || | Sbjct 2082 ACATCGTTGATCGAGG----GCTTCGACGCACCAGGGTACGTGTA-CGAGCAGTTGGTCA 2028 Query 333610 GCTTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGGAACT 333669 ||||||| | |||| ||||| | ||||||| || ||||||||||||| Sbjct 2027 AACGAATGATGGGCTTGCCCTTGTTCTTGATATCGGCGAGGAAACCAGGCTCGGGGAACT 1968 Query 333670 TCCACGTGGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGACGCTTCTTCA 333729 | | | | || | | | | ||| | ||||| | | || || || || | Sbjct 1967 TGAAGGCGATCGTGGCCGCATCGAGGTCATAGTAGGCCTTGGCCTCCGGGCGGAGCTCGA 1908 Query 333730 CGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATAA 333789 |||||| ||||| || || |||| |||| ||||| |||| ||||| ||||| | Sbjct 1907 CGAACTTGGACATGTTGCCGACGTACGTCTTGAGCTTGCGGTTCTTCTCGTAGTGGATGA 1848 Query 333790 TAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACG-AAACG 333848 | ||||| || ||||||||| || |||||||| |||||||| | ||| | || Sbjct 1847 TGTTCGTGCAGACGTTGTCGAGGAAACCCGAGTCGTGCGACACAATGAGCGACGTGATCG 1788 Query 333849 TCCTTAAGGTTGATCAGGTA-TTCAATC-AGCCACCTCACGTTAGACACAGAAAGATGGT 333906 | | | || | | ||||| ||| || ||||| ||||| | |||| | |||| Sbjct 1787 TGCCCATGGACG-TGAGGTAGTTC--TCGAGCCAAGCAACGTTGGCCACATCCAAGTGGT 1731 Query 333907 TGGTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGA 333966 | || ||||| || || || || | | || ||| | ||||| ||||| || || ||| Sbjct 1730 TCGTGGGCTCATCGAGGAGGAGGATATCAGCCTTCTGAAGCATCGCACGAGCGAGTTCGA 1671 Query 333967 GTTTCATTTTCCACCCTCCTGAAAG 333991 | ||||| ||||| || || ||||| Sbjct 1670 GCTTCATCTTCCAACCACCCGAAAG 1646 Score = 87.8 bits (96), Expect = 4e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 334139 GAGATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAGAGGGGAACCCTTCAAGCTG 334198 ||| | ||| || ||||| | || || | | ||| ||| ||||| || || ||||| Sbjct 1504 GAGGTTGTGCTCGACGTAGACCGTCTTGAGCTCGTCCTTAGACGGGAAGCCCTCGAGCTG 1445 Query 334199 ACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCCGTTTGGCCCACACAGACC 334258 ||||| |||| |||||||| || || || || || ||||| || || || ||||| Sbjct 1444 GCCGTTGGCAATGGCGCGCATGAGCGTCGACTTGCCGCAACCGTTGGGGCCGCAGAGACC 1385 Query 334259 GTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAGAAGAATTTTTCCACCATA 334318 |||||||| || ||| || || | || | ||||| || || || | ||||| || Sbjct 1384 GTAGCGGTGGCCCTTCTTGAGGTTCATGCGGGCGTTGTTGAGGAGGATCATGCCACCGTA 1325 Query 334319 TGCCAGAGAAAATTCACAATCACACAGATCCTCACC 334354 || || || || || || || || || ||||| || Sbjct 1324 CGCGAGGGAGAACTCGCAGTCGCAGAGGTCCTCGCC 1289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102836731949700