Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Achlya_20hypogyna_20[genbank_20GCA_5F002081595.1_202017-04-06] 3,062 sequences; 43,398,470 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq880 123 2e-23 seq1051 120 3e-22 seq2606 114 1e-20 seq389 107 2e-18 seq1567 100 3e-16 >seq880 Length=46309 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | ||||| || |||| |||||| || || || |||||||| || | Sbjct 27007 ACCACCACGCAGGCGGAGCACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCCGA 27066 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || |||||| |||| || |||||||||||||| | ||||| |||||||| || || || Sbjct 27067 GAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCCGGGGG 27126 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || || || || || ||||| || || | | || || ||||| Sbjct 27127 GATACCCTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCAATCGAGTCCGAGGGCTCCAC 27186 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||||||| ||||| || || ||||| || ||||| Sbjct 27187 GTCGAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATCTGCAT 27234 >seq1051 Length=134064 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | ||||| || || | |||||| || || || |||||||| || | | Sbjct 119956 CCACCGCGCAGGCGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAG 119897 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | |||||| |||| || |||||||||||||| | ||||| |||||||| || || ||| Sbjct 119896 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCCGGGGGA 119837 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTAT-CACCGGCGTCCAC 64395 || || || || || || || || ||||| || || | | | | |||| || || Sbjct 119836 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTGTCAATGGAGTCCGACGGC-TCGAC 119778 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||||||| |||| || || ||||| |||||||| Sbjct 119777 ATCGAGGGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGATTTGCAT 119730 Score = 111 bits (122), Expect = 2e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | |||||| || || || |||||||| || | || |||||| |||| Sbjct 120169 AGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCC 120110 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||||||||| | ||||| |||||||| || || ||||| || || || || Sbjct 120109 TCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCC 120050 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTAT-CACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||||| || || | | | | |||| || || || | || | ||| Sbjct 120049 TGGATCTTCTGCTTCACGTTGTCAATGGAGTCCGACGGC-TCGACATCGAGGGTGATGGT 119991 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||| |||| || || ||||| || ||||| Sbjct 119990 CTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 119958 >seq2606 Length=15791 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | ||| || || |||| |||||| || || || |||||||| || | Sbjct 3597 ACCACCACGCAGGCGAAGGACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCCGA 3538 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| |||| ||||||||||||||||| | ||||| |||||||| || || || Sbjct 3537 AAGGGTGCGACCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCCGGGGG 3478 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || || || || || ||||| || || | | || | || || Sbjct 3477 GATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCGAC 3418 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||| || |||||||| || ||||| || ||||| Sbjct 3417 GTCGAGCGTGATGGTCTTACCCGTCAAAGTCTTGACGAAGATCTGCAT 3370 >seq389 Length=167588 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || || | |||||| || || || |||||||| || | ||||| |||| Sbjct 110336 AGGACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCC 110395 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 |||||||||||||||||| | ||||| ||||||||||| || ||||| || || || || Sbjct 110396 TCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 110455 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATC-ACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||||| || || | | || |||| || || || | || | || Sbjct 110456 TGGATCTTCTGCTTGACGTTGTCAATCGAGTCGGACGGC-TCGACGTCGAGCGTGATCGT 110514 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||||||| | || || ||||| |||||||| Sbjct 110515 CTTGCCGGTGAGCGTCTTGACGAAGATTTGCAT 110547 >seq1567 Length=70164 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || || | |||||| || || || |||||||| || | ||||| | || Sbjct 49815 AGGACAAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCATCC 49874 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||||||||| | ||||| |||||||| || || || || || || || || Sbjct 49875 TCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCC 49934 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||||| || || | | || || || || || | || | |||| Sbjct 49935 TGGATCTTCTGCTTGACGTTGTCGATCGAGTCCGAGGGCTCAACGTCGAGCGTGATGGTC 49994 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 ||||| |||||||| || |||||||| ||||| || Sbjct 49995 TTGCCAGTCAAAGTCTTGACGAAAATCTGCATATT 50029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499625676095280